Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00665 ATGTTGCATTGTCTGAACGGTTCGGGGAATCTAGGAGCCAGTTGTTCGGACATGACAGTTTTGGAAAGACAAAGGGAAGCAACCATGAAGTGGCAACACCACCATCACGACAATCACCACCCTTACTTTTCCGCAACGGAGTTTCACGTTAACCTCGTTTTCTCTTCTTCTTCCAACAATCTTCCTCAGAGTCAGGGCTTGGTCATGGCGCGTGATGATTCCGCGCTTGCTAATGTCTTGGCTCATTCTCTCAAACCCGACCCGGGTCTCTGCCCCGAACTCGACACTGGATTCGGATCTTCTTCCGTTATTTTACCCAAGGAAAGCAATAAGAAGAGGAAGCCGCAGAACTTCAAGGTTGCTGCGGAGAGTGATAACAAGGACAAGAGAGTGAAAGTGAGTGGCGAGGAAGGAGAATCCAGAGTGACGCACCAAAGCAGCAACAAAAATGGCAAATCCAACGCAGTTAAGAACAACAGAGAAACCTCTGCGGATTCTTCCAAGGATGATTCGAAAGCGTCCGAGGTTCAGAACCAGAAGCGTGAGTACATTCATGTCCGAGCGCGTCGTGGTCAAGCCACTGATAGTCATAGCTTAGCTGAAAGAGTTAGAAGGGAGAAAATCAGTGAGAGAATGAAGTATTTGCAAGATTTGGTTCCGGGTTGCAACAAAATTGCCGGCAAAGCTGGAATGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAACGACAAGTTGAGTTCTTGTCAATGAAATTAGCGGCTGTAAATCCAAGCATTGACGAACTATTTGCCAGAGAGGTGTTTCCTTCTTTGTCTCAAGGTTTACCCAACATTGGGATGCCATCAGATATGAGAATGTGTAACAACCCTTCGTATCTTCAGTTGAATCCAACACAACCACATGTATCATGTTGTGGTGGATTAATAAATAACGTGGGGATAAGCCCTCCCAATATGGGACTTCGAAGGAACATTAGTACTACACATGTACCTTTGTCCGAAGCGTTTCTTGACTCCTCCTGTTTCACTCAAATTCTACCCTCTTCAAATTGGGAAGGTGATTTTCAAAGCCTTTACAATGTTGCTTTTGATCAAGGGCGAGCAACATCCTTTCCTTCTCAACCATTTACAGGTACCAACAAATTTATGACTTGTCAAAATCACTTTTTTTCCTGA 1179 0.4453 MLHCLNGSGNLGASCSDMTVLERQREATMKWQHHHHDNHHPYFSATEFHVNLVFSSSSNNLPQSQGLVMARDDSALANVLAHSLKPDPGLCPELDTGFGSSSVILPKESNKKRKPQNFKVAAESDNKDKRVKVSGEEGESRVTHQSSNKNGKSNAVKNNRETSADSSKDDSKASEVQNQKREYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPSIDELFAREVFPSLSQGLPNIGMPSDMRMCNNPSYLQLNPTQPHVSCCGGLINNVGISPPNMGLRRNISTTHVPLSEAFLDSSCFTQILPSSNWEGDFQSLYNVAFDQGRATSFPSQPFTGTNKFMTCQNHFFS* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00665 392 SMART finulus 198 248 IPR011598 GO:0046983
Phac11g00665 392 FunFam Basic helix-loop-helix transcription factor 189 261 - -
Phac11g00665 392 MobiDBLite consensus disorder prediction 107 143 - -
Phac11g00665 392 CDD bHLH_AtBPE_like 182 261 - -
Phac11g00665 392 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 192 242 IPR011598 GO:0046983
Phac11g00665 392 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 110 287 IPR024097 GO:0006355
Phac11g00665 392 Pfam Helix-loop-helix DNA-binding domain 196 243 IPR011598 GO:0046983
Phac11g00665 392 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 190 262 IPR036638 GO:0046983
Phac11g00665 392 MobiDBLite consensus disorder prediction 144 161 - -
Phac11g00665 392 MobiDBLite consensus disorder prediction 162 201 - -
Phac11g00665 392 Gene3D - 189 263 IPR036638 GO:0046983
Phac11g00665 392 MobiDBLite consensus disorder prediction 102 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00665 Phac-Chr11 4407165 4410067 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00665 5 360 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 38.442 7.99e-58 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac11g00665 HLH 3.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00665 - - vun:114168601 657.907