Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00620 ATGGCTTCCGATTCTTCTCCGAATTTCAACAACGGTCCTTCTTCCCCCGACGACTCCCTTTCCAGCCCTATCGGCAACACGTTCTCGTCGCCGGGAAGTAGGCGCCGCCGCCGATCCTCCACCCCGTCCGCATTCGCCACTCCGTCGGAGCGCCGCTCTCGATTTGCCTCCTCCGAAGCCACCCCAACCGCGCCGCGCTCCCGCCAGAGCGTCGGCGGGCGCGTTCCCGCCACACCTACATCCACCACCGATGACGTGCCAGCCTCTTCTGACGGCGGCGATGGCTACGACATGGACGACGCCAGGCCCACCTTCGTGTGGGGCACCAGCATAAGCGTGGAAGACGTGAACGACGCGATTCACAGGTTTTTGAGGGACTTTAGAGAGGCGTCTTCGTCACAGGCTGACGATAACGGGTTGCACTTGCACACCGAAGGGAAGTATGAGAAATTGATCAGACAGGTTATTGAAGTTGAAGGAGATTCTCTTGACGTTAATGCGCGCGACGTGTTTGATCATGACCCTGATTTGTACACCAAGATGGTTAGATACCCTCTTGAGGTTCTTGCTATCTTTGACTTGGTTTTGATGAACATGGTTAGCCGATTGAAGCCCATGTCTGAGAAGCACATTCAGACTCGGATTTTCAATCTCAAAAGCTCAACCTCAATGAGAAATTTGAACCCTTCTGATATTGAGAGGATGGTGTCATTGAAAGGAATGATTATAAGGTGTAGTTCAATTATACCTGAAATCAGGGAAGCTATATTTAGGTGTCTTGTGTGTGGATTTTGCTGTGACCCAATTCCGGTGGAGAGAGGACGAATAACAGAGCCCACTATATGTTTGAGGGAAGAGTGCCAATCCAGGAATTCCATGACACTTGTTCACAACCGATGCAGGTTTACTGATAAGCAAATTGTGAGGCTTCAGGAGACACCTGACGAGATACCTGAAGGAGGAACACCTCACACAGTTAGCTTGCTGCTGCATGATAAACTGGTGGATATTGGAAAGCCAGGTGACAGAGTTGAGGTGACTGGTATTTATAGGGCTATGACTGTTAGGGTTGGACCAACTCAGAGGACTGTTAAGTCATTGTTCAAGACATATATTGATTGTCTTCACATAAAGAAGACCCATAAGTCCAGGATGCAGGTAGAGGATGCTATGGATATTGATAGTGGCCCTGGCAGAAATGAAGACGGTGTCTTCTTTGAAGAAGAAAAAGTGGCTCGACTGAAGGAGATCTCAAAACGGCCAGATATATATGAAATACTGACAAAGTCATTGGCACCAAACATTTGGGAGCTAGATGACGTGAAGAAAGGCCTTCTTTGTCAGCTTTTTGGTGGCAATGCATTGAAATTAGCTTCTGGTGCCAGCTTCCGTGGTGATATAAATATTCTTCTTGTTGGTGATCCTGGGACAAGCAAGTCCCAGCTACTTCAATACATACACAAACTATCTCCACGTGGCATTTACACCAGTGGAAGGGGAAGCTCTGCAGTTGGACTGACTGCATATGTAGCCAAGGACCCTGAGACTGGAGAAACTGTTCTTGAGAGTGGTGCCCTTGTTTTGAGTGACCGAGGTATCTGTTGTATTGATGAATTTGACAAAATGTCTGACAGTGCAAGGAGCATGTTACATGAGGTGATGGAACAACAAACCGTTTCAATAGCAAAGGCAGGTATAATTGCTTCCCTCAATGCTAGGACTTCGGTGTTGGCTTGTGCAAATCCAAGTGGTTCAAGATATAATCCTCGCTTGTCTGTCATTGACAACATACACCTTCCTCCCACACTTCTGTCCAGGTTTGATTTAATCTACTTGATCCTTGACAAGGCTGATGAGCAGACTGACAGGCGCCTTGCCAAACATATTGTGGCTCTACACTTTGAGAATCCCGAGAATATGGAGCACGATGTGTTGGATATTTCTACATTAACAGATTACGTTAGCTATGCCCGAAAGCACATACACCCTCAGCTTTCTGATGAAGCTGCTGAAGAGTTGACTAGAGGTTATGTGGAAATAAGAAAAAGAGGAAATTTTCCTGGGAGTAGCAAAAAGGTGATAACAGCGACGCCGAGGCAGATTGAGAGTCTGATTCGTCTAAGTGAAGCATTGGCTCGGATTCGCTTTTCGGAATGGGTCGAAAAGGATGATGTAACGGAGGCTTTCCGGCTTTTGGAAGTTGCAATGCAGCAGTCTGCAACGGATCATTCCACTGGAACCATTGATATGGATCTTATAACTACTGGAGTGTCGGCAAGTGAGAGGATTAGGAGAGAAAGTTTGCTACAAGCAACTCGCAACTTAATCATGGAGAAGATGCAGATTGGGGGACCTTCTATGCGGTTAATAGAGTTATTGGAAGAATTAAAGAAGCAGGATACTGGTGTTAGCGAAGTTCATCTCAATGATCTAAGAAATGCTATAGCTAACTTGGCTACCGAAGGATTTGTTACAATGCACGGTGATAGCGTAAAAAGATCTTAA 2505 0.4663 MASDSSPNFNNGPSSPDDSLSSPIGNTFSSPGSRRRRRSSTPSAFATPSERRSRFASSEATPTAPRSRQSVGGRVPATPTSTTDDVPASSDGGDGYDMDDARPTFVWGTSISVEDVNDAIHRFLRDFREASSSQADDNGLHLHTEGKYEKLIRQVIEVEGDSLDVNARDVFDHDPDLYTKMVRYPLEVLAIFDLVLMNMVSRLKPMSEKHIQTRIFNLKSSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIREAIFRCLVCGFCCDPIPVERGRITEPTICLREECQSRNSMTLVHNRCRFTDKQIVRLQETPDEIPEGGTPHTVSLLLHDKLVDIGKPGDRVEVTGIYRAMTVRVGPTQRTVKSLFKTYIDCLHIKKTHKSRMQVEDAMDIDSGPGRNEDGVFFEEEKVARLKEISKRPDIYEILTKSLAPNIWELDDVKKGLLCQLFGGNALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVAKDPETGETVLESGALVLSDRGICCIDEFDKMSDSARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVALHFENPENMEHDVLDISTLTDYVSYARKHIHPQLSDEAAEELTRGYVEIRKRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVEKDDVTEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERIRRESLLQATRNLIMEKMQIGGPSMRLIELLEELKKQDTGVSEVHLNDLRNAIANLATEGFVTMHGDSVKRS* 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00620 834 FunFam DNA helicase 251 303 - -
Phac11g00620 834 ProSitePatterns MCM family signature. 532 540 IPR018525 GO:0003677|GO:0005524|GO:0006260
Phac11g00620 834 FunFam DNA helicase 404 742 - -
Phac11g00620 834 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 434 749 IPR027417 -
Phac11g00620 834 Pfam MCM P-loop domain 411 633 IPR001208 GO:0003677|GO:0005524|GO:0032508
Phac11g00620 834 PRINTS Mini-chromosome maintenance (MCM) protein family signature 603 611 IPR001208 GO:0003677|GO:0005524|GO:0032508
Phac11g00620 834 PRINTS Mini-chromosome maintenance (MCM) protein family signature 552 565 IPR001208 GO:0003677|GO:0005524|GO:0032508
Phac11g00620 834 PRINTS Mini-chromosome maintenance (MCM) protein family signature 524 538 IPR001208 GO:0003677|GO:0005524|GO:0032508
Phac11g00620 834 PRINTS Mini-chromosome maintenance (MCM) protein family signature 464 479 IPR001208 GO:0003677|GO:0005524|GO:0032508
Phac11g00620 834 PRINTS Mini-chromosome maintenance (MCM) protein family signature 576 588 IPR001208 GO:0003677|GO:0005524|GO:0032508
Phac11g00620 834 SMART mcm 220 737 IPR031327 GO:0003677|GO:0005524|GO:0032508
Phac11g00620 834 Gene3D - 407 741 IPR027417 -
Phac11g00620 834 Gene3D - 251 303 - -
Phac11g00620 834 MobiDBLite consensus disorder prediction 1 98 - -
Phac11g00620 834 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 117 788 IPR031327 GO:0003677|GO:0005524|GO:0032508
Phac11g00620 834 SMART AAA_5 465 615 IPR003593 GO:0016887
Phac11g00620 834 Gene3D - 224 363 IPR012340 -
Phac11g00620 834 Gene3D - 742 829 IPR036388 -
Phac11g00620 834 Pfam MCM AAA-lid domain 649 735 IPR041562 -
Phac11g00620 834 MobiDBLite consensus disorder prediction 1 88 - -
Phac11g00620 834 SUPERFAMILY Nucleic acid-binding proteins 143 374 IPR012340 -
Phac11g00620 834 Gene3D - 110 218 - -
Phac11g00620 834 Pfam MCM OB domain 224 353 IPR033762 -
Phac11g00620 834 Pfam MCM N-terminal domain 119 217 IPR027925 -
Phac11g00620 834 ProSiteProfiles MCM family domain profile. 423 629 IPR001208 GO:0003677|GO:0005524|GO:0032508
Phac11g00620 834 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 585 602 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Phac11g00620 834 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 737 746 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Phac11g00620 834 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 246 259 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Phac11g00620 834 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 439 450 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Phac11g00620 834 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 297 309 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Phac11g00620 834 CDD MCM4 426 735 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00620 Phac-Chr11 4129006 4134884 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00620 1 833 Core DNA Replication Machinery Family AT2G16440 73.888 0.0 1247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00620 K02212 - gmx:100782586 1464.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac11g00620 11 4129006 4134884 Phac11g00620 11 4129006 4134884 ECH