Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00619 ATGTCTACTATGCAAGAACAAGGCTTAGAAACAGTGGTAAAGGGATCAAAGTGTGAAGAGTGTGGGAACCAAGCCAAAAAGGACTGTGCCTATTCCAGGTGCAGAACCTGCTGCAAGAACAAAGGCTTCAAGTGCCAAACTCATATCAGAAGCACTTGGATTCCTGTGGATAGAAGACGCCAGAAAGTGGAGCACCAACCTCTCACCACTAATCTTCAGCAGGGAGATATTCCTAAAAGGCACAAGCACAACCCATATTCAAGCTTGGAGTTCAAATTTCCAGCTGTTACAAGTTCCATGGCGTCATTCAGCTGTGTTCAGGTGCGTTCTATGGATGACACGGTTAATGAAACCGCGTATCAAACTTCTGTGAACATTGGAGGACACGTGTTTAGTGGTTTTCTTTATGATCAAGGTCCTGAACAAAGCTTCAACGCTAAGGGTTACAAGAGCTCCATAGACCCTTTTGATCAACAACACGATCTCAGTCTCAGGAGTGTTTCACTCCACACTCGTGATGGTGCAAGTGCAACTATGCCTCCACTCTCACTCACGGCTTCTCAAGAACCATTTTTTATTCCACACCATTCATTTCCCCTAGCTTCCTTCAGACCTGATCTGACATACTTGTCACACCCAAAATCTTAA 648 0.4475 MSTMQEQGLETVVKGSKCEECGNQAKKDCAYSRCRTCCKNKGFKCQTHIRSTWIPVDRRRQKVEHQPLTTNLQQGDIPKRHKHNPYSSLEFKFPAVTSSMASFSCVQVRSMDDTVNETAYQTSVNIGGHVFSGFLYDQGPEQSFNAKGYKSSIDPFDQQHDLSLRSVSLHTRDGASATMPPLSLTASQEPFFIPHHSFPLASFRPDLTYLSHPKS* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00619 215 NCBIfam putative zinc finger domain, LRP1 type 17 59 IPR006510 -
Phac11g00619 215 NCBIfam LRP1 C-terminal domain 92 140 IPR006511 -
Phac11g00619 215 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 10 178 IPR007818 GO:0003700|GO:0006355
Phac11g00619 215 Pfam Domain of unknown function (DUF702) 15 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00619 Phac-Chr11 4123472 4124928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00619 12 139 C2H2 Transcription Factor Family AT2G21400 53.676 3.22e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Phac11g00619 DUF702 4.4e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00619 - - gsj:114376985 337.421