Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00613 ATGAAGATCCAGTGTGATGTGTGTCACAAAGAAGTGGCCTCCTTGTTCTGCCCCTCAGATGAAGCAGCTCTCTGCCATGCTTGTGATAGCAGCATCCACCATGCCAACAAGCTCGCAGACAAACACAAACGCTTCTCTCTCCACCACCCCACCTCCAAAGGCACCACTCTCTGTGATATCTGTCATGAGAAGCGTGCTTATGTATTTTGCAGAGAGGACAGAGCTCTACTTTGTAGACAATGTGACGTTTCCATTCATGGAGCTAACGAACACACCAAGACACACGACAGATTTCTTCTCACTGGAATAAAGCTTGGTGCCACCACTGAAGAAAGAACAATAACAACCTCTCGTAATTCTAAATCAAATGCACAAAGTTCACTCTCAAACCAAAATATTGGTTCCTCTCGCACGGTAGGAGTAGCTTGTGACTCGAGTTCGGTTCCAACAAGCAGCAGCATATCTGAGTACTTGATTCAGACCATTCCCGGTTACTGCATGGAAGACCTTTTAGATGCTTCTTTTGCATCAAATGCTTGCTCTAAGGATTATGAGCAGCAATCAGCGTTTGAAAATCAAGATGATCAACTGCAATCTCAATTTGCCAGTGCTTCGAATCTTTATCCCGAGATTGATTCTTTAGTTGGAGTTATGGAAATGCCAAAAGCAAAAGCTGGTGAAGGATACTCCAATTGGATTCATAGTTATGACTATCCACCCTACAAAGTTCCCTCAATTACTCCTCCTTTAGTAAAAAGAACTAAACGCTCTCGTTAA 777 0.4337 MKIQCDVCHKEVASLFCPSDEAALCHACDSSIHHANKLADKHKRFSLHHPTSKGTTLCDICHEKRAYVFCREDRALLCRQCDVSIHGANEHTKTHDRFLLTGIKLGATTEERTITTSRNSKSNAQSSLSNQNIGSSRTVGVACDSSSVPTSSSISEYLIQTIPGYCMEDLLDASFASNACSKDYEQQSAFENQDDQLQSQFASASNLYPEIDSLVGVMEMPKAKAGEGYSNWIHSYDYPPYKVPSITPPLVKRTKRSR* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00613 258 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 201 - -
Phac11g00613 258 CDD Bbox1_BBX-like 5 47 - -
Phac11g00613 258 Gene3D Classic Zinc Finger 1 98 - -
Phac11g00613 258 MobiDBLite consensus disorder prediction 111 136 - -
Phac11g00613 258 CDD Bbox1_BBX-like 57 100 - -
Phac11g00613 258 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Phac11g00613 258 Pfam B-box zinc finger 56 92 IPR000315 GO:0008270
Phac11g00613 258 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Phac11g00613 258 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Phac11g00613 258 SMART bboxneu5 4 47 IPR000315 GO:0008270
Phac11g00613 258 SMART bboxneu5 53 100 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00613 Phac-Chr11 4078651 4080345 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00613 1 258 C2C2-CO-like Transcription Factor Family AT1G75540 36.336 9.40e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Phac11g00613 zf-B_box 3.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00613 - - pvu:PHAVU_011G040800g 502.286