LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac11g00492	ATGTGTAGAACGATCTCGTTTCTCGTTCACCCACGAGTCCTCCTTCTCTTCCTTGTTCTCTCAATTTTTCTCATTTTCACGTATACTGGTTCTACTACTACTTATGGTTCTACTACTCCAAAACTGGTTGTTGAGGAGAAAATAGAAGAGGTTCATGAAATTACACATAGAGTATTCTTGGACATTGATATTGATAAACAGCGTTTAGGTAGGATAGTGATTGGTTTATATGGCCAAGTTGTACCGAAAACTGTGGAAAATTTTATAGCTTTGTGTACAGGGCGGAAAGAAAAGAGTGAAAATGACTTAAAGCTTCATTACAAAGGAACACCATTTCATCGGATAGTATCTGGTTTTGTGATTCAGGGTGGAGACATTGTTCATCATGATGGTAAAGGGTCTGAATCTATATATGGTGGCACCTTTCCTGATGAGAATTTCAAGATTAAACATTCTCACGCTGGCGTTGTCTCTATGGCAAATTCAGGACCTGACTCCAATGGCTCACAGTTTTTCGTTACCACGGTGAAGGCCAGTTGGTTGGATGGAGAGCATGTTGTATTTGGCAAGGTTGTAGAAGGCATGGATATTGTGTATGCAATTGAAGGGGGAGCTGGAACCTACAGTGGAAAACCCAGAAAGAAGGTAGTGATAGCAGACTCTGGGGAGATACCCAAGAGTCAGTGGGATGAGGAAAGTTGA	702	0.4117	MCRTISFLVHPRVLLLFLVLSIFLIFTYTGSTTTYGSTTPKLVVEEKIEEVHEITHRVFLDIDIDKQRLGRIVIGLYGQVVPKTVENFIALCTGRKEKSENDLKLHYKGTPFHRIVSGFVIQGGDIVHHDGKGSESIYGGTFPDENFKIKHSHAGVVSMANSGPDSNGSQFFVTTVKASWLDGEHVVFGKVVEGMDIVYAIEGGAGTYSGKPRKKVVIADSGEIPKSQWDEES*	234

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac11g00492	233	FunFam	Peptidyl-prolyl cis-trans isomerase	44	230	-	-
	Phac11g00492	233	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	155	170	IPR002130	GO:0000413\|GO:0003755
	Phac11g00492	233	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	183	198	IPR002130	GO:0000413\|GO:0003755
	Phac11g00492	233	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	170	182	IPR002130	GO:0000413\|GO:0003755
	Phac11g00492	233	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	112	124	IPR002130	GO:0000413\|GO:0003755
	Phac11g00492	233	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	76	91	IPR002130	GO:0000413\|GO:0003755
	Phac11g00492	233	Gene3D	-	44	230	IPR029000	-
	Phac11g00492	233	ProSiteProfiles	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	59	223	IPR002130	GO:0000413\|GO:0003755
	Phac11g00492	233	Pfam	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	62	221	IPR002130	GO:0000413\|GO:0003755
	Phac11g00492	233	ProSitePatterns	Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.	107	124	IPR020892	GO:0003755\|GO:0006457

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac11g00492	Phac-Chr11	3532882	3536787	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac11g00492	70	221	U-box Gene Family	AT5G67530	43.137	1.48e-28	111

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac11g00492	-		-	gmx:100800775	398.667

Showing 1 to 1 of 1 entries