Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00468 ATGGCATCGGCCTTCGTCAAGCTCGATGATTCTCCTATGTTCCAAAAACAGTTATTTTCTCTTGAAGAAACAACTGATGAGTTAAAGGATCGGTGCCAGAAACTATATAATGGGTGTAAGAAGTTTATGACAGCTTTGGGGGAAGCATATAATGGAGAAATATCCTTTGCTGATTCATTAGAAGTATTTGGTGGTGGCCAAGATGACCCTGTTAGTGTATCAATTGGAGGGCCCGTCATAACTAAGTTTATTACCACACTGCGCGAGCTAGCTTCTTTTAAAGAGCTTCTTCGTTCACAGGTAGAGCATGTGTTGGTTGACCGGCTGACGGAGTTTATAAGCATTGATTTGCAAGATACGAAGGATTCTCGTCGTCGTTTTGACAAAGCTGTGCATTCTTATGATCAGTCACGAGAGAAGTTTGTCTCTTTGAAGAAGAATACACCAGAAGATGTTGTAGCTGAATTAGAAGAGGATCTACAAAATTCAAAATCAACATTTGAAAAAAGCCGCTTCAATCTAGTAAACTCACTCATGAATATTGAAGCGAAAAAGAAGTATGAGTTCTTGGAGTCCATTAGTGCAATAATGGATGCTCATTTGAGATATTTTAAGCTGGGTTATGACTTACTAAGCCAAATGGAGCCCTATATTCACCAGGTGCTGACATATGCACAACAATCTAAAGAACTTGCTAATATTGAGCAAGATAAGCTTGCAAAACGGATTCAGGAATACAGAACACAGGCAGAGCTGGAGAATATACAAGTTTCTAGCAATTTTACCGAAACCATTCCAGGTTCTGAAGGCACCCATGTTGTAGGTTTGAACTCTTACAGAAGTTTAGATTCAGGGATGCTGTCTGCACCCAAAGGGGAGCTTCAAACAGTTAAACAAGGTTATCTGTTAAAACGGTCATCAGGCTCACGTGGAGATTGGAAACGGAGGTTCTTTGTACTTGATAACCAAGGGAATTTATATTATTACAGAGTGAAGGGTGTCAAACCCACGGGCTCTCAGGCATATAATTATGGTCGTTCTTATGAACAAAATAGTGGAATGTTTGGTAGATTCCGTTCAAAACACAACAGGGCTGCATCACTGAATGATGATATTTTAGATTGTTATACTATTGATCTATGCACATCAACTATAAAGATGGATGCAGAGGATACAGATCTACGACTTTGCTTCCGAATAATTTCTCCCTCAAAAACATTCACACTTCAGGCCGAAAATGAAGCTGCTAGGATGGACTGGGTTAACAAAATTACTGGAGCTATCACATCACTTTTTAATTCACAGTTTCTTCAACAGCCTCAATATGGTAGAGAGAATTCACAGAAAAAAAACTTACCACCAATTGGTGCTTCTTTGTCAAGTCAATCTGAGGATGGTCAGAAATCATTGAGAGATGACTTATATTCCAAGGAAGGGGGTAGTGTCTCTAAGATTTTAAGGGGAATTCCAGGGAATGATAAATGTGCTGAGTGCAGTGCTTCTGAACCAGAATGGGCATCTCTAAACCTTGGCATATTGCTATGTATTGAATGCTCTGGAGTGCATCGAAATCTTGGTGTTCATATCTCAAAGGTGAGGTCTATAACATTAGATGTTAGGGTGTGGGAAAATACCATTTTGGAGTTATTTGATAACTTAGGTAATGCTTATTGTAATTCTATATGGGAGGGCTTGCTTCTGCTTGATCATGAAAGGTAA 1719 0.3927 MASAFVKLDDSPMFQKQLFSLEETTDELKDRCQKLYNGCKKFMTALGEAYNGEISFADSLEVFGGGQDDPVSVSIGGPVITKFITTLRELASFKELLRSQVEHVLVDRLTEFISIDLQDTKDSRRRFDKAVHSYDQSREKFVSLKKNTPEDVVAELEEDLQNSKSTFEKSRFNLVNSLMNIEAKKKYEFLESISAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKELANIEQDKLAKRIQEYRTQAELENIQVSSNFTETIPGSEGTHVVGLNSYRSLDSGMLSAPKGELQTVKQGYLLKRSSGSRGDWKRRFFVLDNQGNLYYYRVKGVKPTGSQAYNYGRSYEQNSGMFGRFRSKHNRAASLNDDILDCYTIDLCTSTIKMDAEDTDLRLCFRIISPSKTFTLQAENEAARMDWVNKITGAITSLFNSQFLQQPQYGRENSQKKNLPPIGASLSSQSEDGQKSLRDDLYSKEGGSVSKILRGIPGNDKCAECSASEPEWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVRVWENTILELFDNLGNAYCNSIWEGLLLLDHER* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00468 572 SMART arf_gap_3 480 572 IPR001164 GO:0005096
Phac11g00468 572 SUPERFAMILY ArfGap/RecO-like zinc finger 484 566 IPR037278 -
Phac11g00468 572 Pfam BAR domain of APPL family 8 230 IPR004148 GO:0005515|GO:0005737
Phac11g00468 572 SUPERFAMILY BAR/IMD domain-like 8 318 IPR027267 -
Phac11g00468 572 Pfam PH domain 297 428 IPR001849 -
Phac11g00468 572 SMART PH_update 296 431 IPR001849 -
Phac11g00468 572 SUPERFAMILY PH domain-like 296 447 - -
Phac11g00468 572 CDD PH_ACAP 298 433 - -
Phac11g00468 572 Pfam Putative GTPase activating protein for Arf 484 564 IPR001164 GO:0005096
Phac11g00468 572 PANTHER CENTAURIN/ARF 3 566 IPR045258 GO:0005096
Phac11g00468 572 MobiDBLite consensus disorder prediction 443 466 - -
Phac11g00468 572 CDD BAR_SFC_plant 16 217 IPR035670 -
Phac11g00468 572 Gene3D Arf GTPase activating protein 469 571 IPR038508 -
Phac11g00468 572 ProSiteProfiles PH domain profile. 295 429 IPR001849 -
Phac11g00468 572 Gene3D Arfaptin homology (AH) domain/BAR domain 7 253 IPR027267 -
Phac11g00468 572 CDD ArfGap 484 572 - -
Phac11g00468 572 PRINTS HIV Rev interacting protein signature 511 528 IPR001164 GO:0005096
Phac11g00468 572 PRINTS HIV Rev interacting protein signature 492 511 IPR001164 GO:0005096
Phac11g00468 572 PRINTS HIV Rev interacting protein signature 534 555 IPR001164 GO:0005096
Phac11g00468 572 Gene3D - 291 449 IPR011993 -
Phac11g00468 572 ProSiteProfiles ARF GTPase-activating proteins domain profile. 480 572 IPR001164 GO:0005096
Phac11g00468 572 SMART 5bar 13 220 IPR004148 GO:0005515|GO:0005737
Phac11g00468 572 Coils Coil 229 249 - -
Phac11g00468 572 MobiDBLite consensus disorder prediction 443 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00468 Phac-Chr11 3352033 3364414 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00468 490 566 C2H2 Transcription Factor Family AT4G05330 50.000 8.56e-19 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00468 K12489 - gmx:100796740 1025