Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00467 ATGACAGCTTTGGGGGAAGCATATAATGGAGAAATATCCTTTGCTGATTCATTAGAAGTATTTGGTGGTGGCCAAGATGACCCTGTTAGTGTATCAATTGGAGGGCCCGTCATAACTAAGTTTATTACCACACTGCGCGAGCTAGCTTCTTTTAAAGAGCTTCTTCGTTCACAGGTAGAGCATGTGTTGGTTGACCGGCTGACGGAGTTTATAAGCATTGATTTGCAAGATACGAAGGATTCTCGTCGTCGTTTTGACAAAGCTGTGCATTCTTATGATCAGTCACGAGAGAAGTTTGTCTCTTTGAAGAAGAATACACCAGAAGATGTTGTAGCTGAATTAGAAGAGGATCTACAAAATTCAAAATCAACATTTGAAAAAAGCCGCTTCAATCTAGTAAACTCACTCATGAATATTGAAGCGAAAAAGAAGTATGAGTTCTTGGAGTCCATTAGTGCAATAATGGATGCTCATTTGAGATATTTTAAGCTGGGTTATGACTTACTAAGCCAAATGGAGCCCTATATTCACCAGGTGCTGACATATGCACAACAATCTAAAGAACTTGCTAATATTGAGCAAGATAAGCTTGCAAAACGGATTCAGGAATACAGAACACAGGCAGAGCTGGAGAATATACAAGTTTCTAGCAATTTTACCGAAACCATTCCAGGTTCTGAAGGCACCCATGTTGTAGGTTTGAACTCTTACAGAAGTTTAGATTCAGGGATGCTGTCTGCACCCAAAGGGGAGCTTCAAACAGTTAAACAAGGTTATCTGTTAAAACGGTCATCAGGCTCACGTGGAGATTGGAAACGGAGGTTCTTTGTACTTGATAACCAAGGGAATTTATATTATTACAGAGTGAAGGGTGTCAAACCCACGGGCTCTCAGGCATATAATTATGGTCGTTCTTATGAACAAAATAGTGGAATGTTTGGTAGATTCCGTTCAAAACACAACAGGGCTGCATCACTGAATGATGATATTTTAGATTGTTATACTATTGATCTATGCACATCAACTATAAAGATGGATGCAGAGGATACAGATCTACGACTTTGCTTCCGAATAATTTCTCCCTCAAAAACATTCACACTTCAGGCCGAAAATGAAGCTGCTAGGATGGACTGGGTTAACAAAATTACTGGAGCTATCACATCACTTTTTAATTCACAGTTTCTTCAACAGCCTCAATATGGTAGAGAGAATTCACAGAAAAAAAACTTACCACCAATTGGTGCTTCTTTGTCAAGTCAATCTGAGGATGGTCAGAAATCATTGAGAGATGACTTATATTCCAAGGAAGGGGGTAGTGTCTCTAAGATTTTAAGGGGAATTCCAGGGAATGATAAATGTGCTGAGTGCAGTGCTTCTGAACCAGAATGGGCATCTCTAAACCTTGGCATATTGCTATGTATTGAATGCTCTGGAGTGCATCGAAATCTTGGTGTTCATATCTCAAAGGTGAGGTCTATAACATTAGATGTTAGGGTGTGGGAAAATACCATTTTGGAGTTATTTGATAACTTAGGTAATGCTTATTGTAATTCTATATGGGAGGGCTTGCTTCTGCTTGATCATGAAAGGGTAGGTGAATTACATGTGCCTATTAAACCTTGCTCAACAGATGCCTTCCAAATCAAAGAGAAATACATCCAAGCAAAGTACGTAGAGAAATCACTAATAATCCGAGAAGAGGATATACCTGAGAATCCTTCAGTTTCCATAAAAATTTGGCAAGCAGTTCAGGCTGCAAATGTACGAGAAGTGTATCGCCTCATTGTTACATCAACATCAAATTTGATAAACACAAAATATGGTGATGAGGTTCACCATGCTTCTGACGCTGAAGGGCAGCAGCATGATCCTGAAGCCTGTCTGAAGGTTGCAGAGACTATTGAGACTGAGAGGTGTTTCCGGGGATGGTCATTATTACATTTGGCATGTCTTACTGACAGTGCACTGATGGTTGAGTTGTTGCTCCAATTTGGTGCTGATGTAAACATGTGTGATTATCATGGAAGAACTCCCTTGCACCATTGCATTACAAGTGGGAAAAATAAATTGGCAAAGTTTCTATTAAGAAGGGGTGCAAGGCCGTCAGTTAAAGATGCCGGAGGGCTCAGTATACTTGAAAGAGCAATGGAGATGGGAGCAATAACTGACGAAGAGCTATTTATCATGCTTGCTGAATGCTAG 2202 0.4001 MTALGEAYNGEISFADSLEVFGGGQDDPVSVSIGGPVITKFITTLRELASFKELLRSQVEHVLVDRLTEFISIDLQDTKDSRRRFDKAVHSYDQSREKFVSLKKNTPEDVVAELEEDLQNSKSTFEKSRFNLVNSLMNIEAKKKYEFLESISAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKELANIEQDKLAKRIQEYRTQAELENIQVSSNFTETIPGSEGTHVVGLNSYRSLDSGMLSAPKGELQTVKQGYLLKRSSGSRGDWKRRFFVLDNQGNLYYYRVKGVKPTGSQAYNYGRSYEQNSGMFGRFRSKHNRAASLNDDILDCYTIDLCTSTIKMDAEDTDLRLCFRIISPSKTFTLQAENEAARMDWVNKITGAITSLFNSQFLQQPQYGRENSQKKNLPPIGASLSSQSEDGQKSLRDDLYSKEGGSVSKILRGIPGNDKCAECSASEPEWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVRVWENTILELFDNLGNAYCNSIWEGLLLLDHERVGELHVPIKPCSTDAFQIKEKYIQAKYVEKSLIIREEDIPENPSVSIKIWQAVQAANVREVYRLIVTSTSNLINTKYGDEVHHASDAEGQQHDPEACLKVAETIETERCFRGWSLLHLACLTDSALMVELLLQFGADVNMCDYHGRTPLHHCITSGKNKLAKFLLRRGARPSVKDAGGLSILERAMEMGAITDEELFIMLAEC* 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00467 733 Gene3D - 574 725 IPR036770 -
Phac11g00467 733 ProSiteProfiles PH domain profile. 253 387 IPR001849 -
Phac11g00467 733 ProSiteProfiles Ankyrin repeat profile. 641 673 IPR002110 GO:0005515
Phac11g00467 733 PRINTS HIV Rev interacting protein signature 450 469 IPR001164 GO:0005096
Phac11g00467 733 PRINTS HIV Rev interacting protein signature 469 486 IPR001164 GO:0005096
Phac11g00467 733 PRINTS HIV Rev interacting protein signature 492 513 IPR001164 GO:0005096
Phac11g00467 733 MobiDBLite consensus disorder prediction 401 423 - -
Phac11g00467 733 SUPERFAMILY ArfGap/RecO-like zinc finger 442 563 IPR037278 -
Phac11g00467 733 SUPERFAMILY Ankyrin repeat 582 728 IPR036770 -
Phac11g00467 733 Pfam PH domain 255 386 IPR001849 -
Phac11g00467 733 MobiDBLite consensus disorder prediction 401 424 - -
Phac11g00467 733 SUPERFAMILY PH domain-like 254 405 - -
Phac11g00467 733 SMART arf_gap_3 438 570 IPR001164 GO:0005096
Phac11g00467 733 Gene3D Arfaptin homology (AH) domain/BAR domain 1 211 IPR027267 -
Phac11g00467 733 ProSiteProfiles Ankyrin repeat profile. 674 706 IPR002110 GO:0005515
Phac11g00467 733 Gene3D Arf GTPase activating protein 420 570 IPR038508 -
Phac11g00467 733 SMART ANK_2a 641 670 IPR002110 GO:0005515
Phac11g00467 733 SMART ANK_2a 674 703 IPR002110 GO:0005515
Phac11g00467 733 Pfam Ankyrin repeats (3 copies) 637 705 IPR002110 GO:0005515
Phac11g00467 733 CDD BAR_SFC_plant 1 175 IPR035670 -
Phac11g00467 733 CDD ArfGap 442 557 - -
Phac11g00467 733 Gene3D - 249 407 IPR011993 -
Phac11g00467 733 Pfam Putative GTPase activating protein for Arf 442 562 IPR001164 GO:0005096
Phac11g00467 733 SUPERFAMILY BAR/IMD domain-like 3 276 IPR027267 -
Phac11g00467 733 Coils Coil 187 207 - -
Phac11g00467 733 SMART 5bar 1 178 IPR004148 GO:0005515|GO:0005737
Phac11g00467 733 CDD PH_ACAP 256 391 - -
Phac11g00467 733 Pfam BAR domain of APPL family 13 188 IPR004148 GO:0005515|GO:0005737
Phac11g00467 733 SMART PH_update 254 389 IPR001849 -
Phac11g00467 733 PANTHER CENTAURIN/ARF 3 731 IPR045258 GO:0005096
Phac11g00467 733 ProSiteProfiles ARF GTPase-activating proteins domain profile. 438 570 IPR001164 GO:0005096
Phac11g00467 733 ProSiteProfiles Ankyrin repeat region circular profile. 674 705 - -
Phac11g00467 733 ProSiteProfiles Ankyrin repeat region circular profile. 641 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00467 Phac-Chr11 3352033 3364414 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00467 448 524 C2H2 Transcription Factor Family AT4G05330 50.000 2.00e-18 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00467 K12489 - gmx:100796740 1305.43