Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00466 ATGGCATCGGCCTTCGTCAAGCTCGATGATTCTCCTATGTTCCAAAAACAGTTATTTTCTCTTGAAGAAACAACTGATGAGTTAAAGGATCGGTGCCAGAAACTATATAATGGGTGTAAGAAGTTTATGACAGCTTTGGGGGAAGCATATAATGGAGAAATATCCTTTGCTGATTCATTAGAAGTATTTGGTGGTGGCCAAGATGACCCTGTTAGTGTATCAATTGGAGGGCCCGTCATAACTAAGTTTATTACCACACTGCGCGAGCTAGCTTCTTTTAAAGAGCTTCTTCGTTCACAGGTAGAGCATGTGTTGGTTGACCGGCTGACGGAGTTTATAAGCATTGATTTGCAAGATACGAAGGATTCTCGTCGTCGTTTTGACAAAGCTGTGCATTCTTATGATCAGTCACGAGAGAAGTTTGTCTCTTTGAAGAAGAATACACCAGAAGATGTTGTAGCTGAATTAGAAGAGGATCTACAAAATTCAAAATCAACATTTGAAAAAAGCCGCTTCAATCTAGTAAACTCACTCATGAATATTGAAGCGAAAAAGAAGTATGAGTTCTTGGAGTCCATTAGTGCAATAATGGATGCTCATTTGAGATATTTTAAGCTGGGTTATGACTTACTAAGCCAAATGGAGCCCTATATTCACCAGGTGCTGACATATGCACAACAATCTAAAGAACTTGCTAATATTGAGCAAGATAAGCTTGCAAAACGGATTCAGGAATACAGAACACAGGCAGAGCTGGAGAATATACAAGTTTCTAGCAATTTTACCGAAACCATTCCAGGTTCTGAAGGCACCCATGTTGTAGGTTTGAACTCTTACAGAAGTTTAGATTCAGGGATGCTGTCTGCACCCAAAGGGGAGCTTCAAACAGTTAAACAAGGTTATCTGTTAAAACGGTCATCAGGCTCACGTGGAGATTGGAAACGGAGGTTCTTTGTACTTGATAACCAAGGGAATTTATATTATTACAGAGTGAAGGGTGTCAAACCCACGGGCTCTCAGGCATATAATTATGGTCGTTCTTATGAACAAAATAGTGGAATGTTTGGTAGATTCCGTTCAAAACACAACAGGGCTGCATCACTGAATGATGATATTTTAGATTGTTATACTATTGATCTATGCACATCAACTATAAAGATGGATGCAGAGGATACAGATCTACGACTTTGCTTCCGAATAATTTCTCCCTCAAAAACATTCACACTTCAGGCCGAAAATGAAGCTGCTAGGATGGACTGGGTTAACAAAATTACTGGAGCTATCACATCACTTTTTAATTCACAGTTTCTTCAACAGCCTCAATATGGTAGAGAGAATTCACAGAAAAAAAACTTACCACCAATTGGTGCTTCTTTGTCAAGTCAATCTGAGGATGGTCAGAAATCATTGAGAGATGACTTATATTCCAAGGAAGGGGGTAGTGTCTCTAAGATTTTAAGGGGAATTCCAGGGAATGATAAATGTGCTGAGTGCAGTGCTTCTGAACCAGAATGGGCATCTCTAAACCTTGGCATATTGCTATGTATTGAATGCTCTGGAGTGCATCGAAATCTTGGTGTTCATATCTCAAAGGTGAGGTCTATAACATTAGATGTTAGGGTGTGGGAAAATACCATTTTGGAGTTATTTGATAACTTAGGTAATGCTTATTGTAATTCTATATGGGAGGGCTTGCTTCTGCTTGATCATGAAAGGGTAGGTGAATTACATGTGCCTATTAAACCTTGCTCAACAGATGCCTTCCAAATCAAAGAGAAATACATCCAAGCAAAGTACGTAGAGAAATCACTAATAATCCGAGAAGAGGATATACCTGAGAATCCTTCAGTTTCCATAAAAATTTGGCAAGCAGTTCAGGCTGCAAATGTACGAGAAGTGTATCGCCTCATTGTTACATCAACATCAAATTTGATAAACACAAAATATGGTGATGAGGTTCACCATGCTTCTGACGCTGAAGGGCAGCAGCATGATCCTGAAGCCTGTCTGAAGGTTGCAGAGACTATTGAGACTGAGAGGTGTTTCCGGGGATGGTCATTATTACATTTGGCATGTCTTACTGACAGTGCACTGATGGTTGAGTTGTTGCTCCAATTTGGTGCTGATGTAAACATGTGTGATTATCATGGAAGAACTCCCTTGCACCATTGCATTACAAGTGGGAAAAATAAATTGGCAAAGTTTCTATTAAGAAGGGGTGCAAGGCCGTCAGTTAAAGATGCCGGAGGGCTCAGTATACTTGAAAGAGCAATGGAGATGGGAGCAATAACTGACGAAGAGCTATTTATCATGCTTGCTGAATGCTAG 2328 0.3995 MASAFVKLDDSPMFQKQLFSLEETTDELKDRCQKLYNGCKKFMTALGEAYNGEISFADSLEVFGGGQDDPVSVSIGGPVITKFITTLRELASFKELLRSQVEHVLVDRLTEFISIDLQDTKDSRRRFDKAVHSYDQSREKFVSLKKNTPEDVVAELEEDLQNSKSTFEKSRFNLVNSLMNIEAKKKYEFLESISAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKELANIEQDKLAKRIQEYRTQAELENIQVSSNFTETIPGSEGTHVVGLNSYRSLDSGMLSAPKGELQTVKQGYLLKRSSGSRGDWKRRFFVLDNQGNLYYYRVKGVKPTGSQAYNYGRSYEQNSGMFGRFRSKHNRAASLNDDILDCYTIDLCTSTIKMDAEDTDLRLCFRIISPSKTFTLQAENEAARMDWVNKITGAITSLFNSQFLQQPQYGRENSQKKNLPPIGASLSSQSEDGQKSLRDDLYSKEGGSVSKILRGIPGNDKCAECSASEPEWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVRVWENTILELFDNLGNAYCNSIWEGLLLLDHERVGELHVPIKPCSTDAFQIKEKYIQAKYVEKSLIIREEDIPENPSVSIKIWQAVQAANVREVYRLIVTSTSNLINTKYGDEVHHASDAEGQQHDPEACLKVAETIETERCFRGWSLLHLACLTDSALMVELLLQFGADVNMCDYHGRTPLHHCITSGKNKLAKFLLRRGARPSVKDAGGLSILERAMEMGAITDEELFIMLAEC* 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00466 775 Gene3D - 291 449 IPR011993 -
Phac11g00466 775 SUPERFAMILY Ankyrin repeat 624 770 IPR036770 -
Phac11g00466 775 MobiDBLite consensus disorder prediction 443 466 - -
Phac11g00466 775 SMART ANK_2a 716 745 IPR002110 GO:0005515
Phac11g00466 775 SMART ANK_2a 683 712 IPR002110 GO:0005515
Phac11g00466 775 SMART arf_gap_3 480 612 IPR001164 GO:0005096
Phac11g00466 775 Gene3D Arfaptin homology (AH) domain/BAR domain 7 253 IPR027267 -
Phac11g00466 775 Pfam PH domain 297 428 IPR001849 -
Phac11g00466 775 ProSiteProfiles PH domain profile. 295 429 IPR001849 -
Phac11g00466 775 SUPERFAMILY ArfGap/RecO-like zinc finger 484 605 IPR037278 -
Phac11g00466 775 ProSiteProfiles Ankyrin repeat profile. 716 748 IPR002110 GO:0005515
Phac11g00466 775 SMART 5bar 13 220 IPR004148 GO:0005515|GO:0005737
Phac11g00466 775 Coils Coil 229 249 - -
Phac11g00466 775 ProSiteProfiles Ankyrin repeat profile. 683 715 IPR002110 GO:0005515
Phac11g00466 775 SUPERFAMILY BAR/IMD domain-like 8 318 IPR027267 -
Phac11g00466 775 PANTHER CENTAURIN/ARF 3 773 IPR045258 GO:0005096
Phac11g00466 775 SMART PH_update 296 431 IPR001849 -
Phac11g00466 775 CDD PH_ACAP 298 433 - -
Phac11g00466 775 PRINTS HIV Rev interacting protein signature 534 555 IPR001164 GO:0005096
Phac11g00466 775 PRINTS HIV Rev interacting protein signature 492 511 IPR001164 GO:0005096
Phac11g00466 775 PRINTS HIV Rev interacting protein signature 511 528 IPR001164 GO:0005096
Phac11g00466 775 Pfam Ankyrin repeats (3 copies) 679 747 IPR002110 GO:0005515
Phac11g00466 775 CDD BAR_SFC_plant 16 217 IPR035670 -
Phac11g00466 775 Gene3D Arf GTPase activating protein 462 612 IPR038508 -
Phac11g00466 775 Gene3D - 616 767 IPR036770 -
Phac11g00466 775 ProSiteProfiles ARF GTPase-activating proteins domain profile. 480 612 IPR001164 GO:0005096
Phac11g00466 775 ProSiteProfiles Ankyrin repeat region circular profile. 716 747 - -
Phac11g00466 775 CDD ArfGap 484 599 - -
Phac11g00466 775 SUPERFAMILY PH domain-like 296 447 - -
Phac11g00466 775 ProSiteProfiles Ankyrin repeat region circular profile. 683 714 - -
Phac11g00466 775 Pfam BAR domain of APPL family 8 230 IPR004148 GO:0005515|GO:0005737
Phac11g00466 775 Pfam Putative GTPase activating protein for Arf 484 604 IPR001164 GO:0005096
Phac11g00466 775 MobiDBLite consensus disorder prediction 443 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00466 Phac-Chr11 3352033 3364414 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00466 490 566 C2H2 Transcription Factor Family AT4G05330 50.000 2.19e-18 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00466 K12489 - gmx:100796740 1383.62