Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00456 ATGAGTTCTCGGACAGGCAAGGGACCGGCTGTCAGAAGCTACCGTAGGAGAAAGACAACTTTGGACCTTGACCTTAATCGTGTACCGGCTGGTGACAATCGGGAGCAGGAGGGACCTTCAACTCAGTCAGGGCTACAAGGAATTGTAGTTGAACAGCAGCCACCGGCTTCTCAACCGGCGATGATTGATGTGGAAGACATTGATGATGATGTTGTTGAATGTACCCCAAGGGCTTTTGCTGAGGCTAAAAACAAATCAAGAAGAAACCGTGGGAGTACTGTAGTTGATGTGGAACTAGAAGATCAGACTCGGCGCAACAAGCGCAGAAGAGAATTGCGAAACCAAACAATTATTAATTGTGAGAAGTATATAAATTTAGAAGGCAGTAGCAGTTCTATGAATGATAGTGTTAAAGTGCTTCCTGAACTGCGAATTGAGCCTGTTTTCAACTGTCCAATATGTATGGGACCATTGGTAGAAGAAATGTCGACAAGGTGTGGTCATATTTTTTGCAAGAATTGCATCAAGGCTGCTATAAGCGCTCAGGGAAAATGCCCTACCTGTAGAAAAAAGATTACTGTGAAAGAGCTTATAAGGGTGTTTCTCCCATCAACTGGTTGA 621 0.4412 MSSRTGKGPAVRSYRRRKTTLDLDLNRVPAGDNREQEGPSTQSGLQGIVVEQQPPASQPAMIDVEDIDDDVVECTPRAFAEAKNKSRRNRGSTVVDVELEDQTRRNKRRRELRNQTIINCEKYINLEGSSSSMNDSVKVLPELRIEPVFNCPICMGPLVEEMSTRCGHIFCKNCIKAAISAQGKCPTCRKKITVKELIRVFLPSTG* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00456 206 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Phac11g00456 206 MobiDBLite consensus disorder prediction 15 31 - -
Phac11g00456 206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 205 IPR013083 -
Phac11g00456 206 SUPERFAMILY RING/U-box 150 195 - -
Phac11g00456 206 MobiDBLite consensus disorder prediction 35 53 - -
Phac11g00456 206 PANTHER ELFLESS, ISOFORM B 1 205 - -
Phac11g00456 206 MobiDBLite consensus disorder prediction 1 57 - -
Phac11g00456 206 SMART ring_2 151 188 IPR001841 -
Phac11g00456 206 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Phac11g00456 206 Pfam Zinc finger, C3HC4 type (RING finger) 150 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00456 Phac-Chr11 3306593 3310780 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00456 12 205 C3H Transcription Factor Family AT5G48655 51.244 5.80e-52 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00456 K22651 - gmx:100792853 308.916