Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00430 ATGGGCAAGTCTAGCAAGAAATCTGCTCTCAAGGTTGACGCTGCTCCAGCCGTTGTTCCACCATCGAAATCCGCCAAACAGGGCAAGAGACAAGCTGAAGAAGAAATTGAGAAGGTGATTGCAAAAAAACAGAAGATAGAGGAGGTTGCTCAGAAGATAAAGAAGGAAGCAAAGGTTCAAAAGAAGAAGGAAAGTAGTTCTGACGATTCTTCTTCTGAATCTGAAGATGAGAAACCTGCTGTCAAACCTACCGCCCCCTCAAAAAAGGCACCTGCCAAAAATGGTACTGGAAGTGCCCCTTCAAAGAAAGGAAAGCCAGCTTCCAGCTCTTCTGAATCATCCGAAGATAGCTCTTCTGATGAGGAAGAATTGAGTGCAAAGAAGCCACAGAAAGTGATAGTTGAGAAACAAAAGAAAGCTGCACCTGTGCCAAAGAAGGAGAGTAGTTCAGATGATGATTCTTCAGAATCTGAAGATGAGAAACCTGTACCTAAAGCTGCTGTTCCTTCAAAAAAGACTCCCGCTAAAAATGGTGCACCAGCAAAGAAAGGCAAGCCAGCTAGCAGCTCCAGTGATTCTGAATCTTCTGAAGATGACTCTGAAGATGAGAAACCTGCTGCGAAGAATGGTGCAGTAACTGCCCCTGCAAATAAAGGCAAACCAGCTGCAGTTTCAGACTCTTCTGATTCCTCCTCTGACGAGGAAGATGTTCCAAAGAAAATATCTGCAACTACAAAGCCGCCTGCATCATCAGTTGCTCCAGCTAAGAAAGTGGAAAGCTCGGATGATGATGATTCAAGTGAAGAAGATTCCGATGATGACGATGATGTCAAGCCTGCTGCAGCTGCTGTGTCCAAGCCTTCTGCTGTATTAAAGAAGAAAGTTGATAGCTCTGATTCTGATGATAGCAGCTCTGAAGAAGAAGACAATAAAAAGACTGCCAAACCTGCTTCCAATGCCAAGTCTTTGCCTTTGTCTAAGCAGCCTGTAAAAACGTCAAAAACTAGTGATTCAGATGAAGAGGAGTCTTCTGATAGTGAATCTGAAGAGGAAAAGCAGGGAAAGAAGATGGAAATAGACGATGATGATAGTTCTGATGAAAGTGAACAACCTCAGAAGAAGGCTGTGAAAAGTGCGAAAGAAAGCAGTGAGAGTTCTGATGAGGATAGTGAGGAAGAAAGTGAGGAGGAACAATCCAAAACTCCGCAAAAAAGAGCTAGGGATGTTGAGATGGTTGATGCTTCATCTGGAAAGAAAACTCCCCATACCCCAACTACACCAAATGCAGAAAGTGGTGTTTCAAATACTCTTTTTGTAGGGAACCTGGCATACAGCGTTGACCGATCTGATGTTGAAAATTTCTTCAAGGATTGTGGAGAAGTTGTTGATGTTCGTCTTGCTACAGATGAGGATGGAAGGTTCAAAGGATTTGGACATGTGGAGTTTGCAACAGTTGAGGCTGCCCAGAAAGCTCTTCTTGAGTTGAATGGTCAAGAATTGCACAATCGTCCACTGCGGCTGGATTCTGCCAGGGTTCGGGACAGGAGTTCGTATACTCCCAATAGCAGCAACTGGAACAACTCATCACAGAAAAGTGGAAGAGGCCAGTCTCAAACTCTATTTGTAAGGGGTTTTGATAAATCCCTTGGGGAGGATGAGATAAGAGCTAGTTTGGAAGAACATTTTGGTTCCTGTGGAGAAGTTACAAGGGTATCTATTCCCAAAGATTACGAGACTGGTGCTGTCAAGGGGTTTGCTTACATGGACTTCAGTGATGCTGATGGCCTGAGCAAAGCTCTAGAACTCCATGAAACTGAACTTGGAGGTTATACCCTCTCCGTGGATGAAGCAAAGCCGAGGGATACCCAAGGCTCTGGTGGTAGAGGCGGTGGTGGAAGAGGTGGTGGTGGTAGATTTGGTGGTGGAAGAGGTGGAAGTGGCGGTAGATTTGGTGGTAGTGGTGGTGGCCGATTTGGTGGTGGAAGAGGTGGAAGTGGTGGCCGTTTTGGTGGTGGAAGAGGCGGTGGTGGAAGGGGTCGTGGACCACCCAGTAGATCATTCGCCGCGGAAGGGAAAAAGACCAAGTTTGCCGATGAAGACTAG 2103 0.457 MGKSSKKSALKVDAAPAVVPPSKSAKQGKRQAEEEIEKVIAKKQKIEEVAQKIKKEAKVQKKKESSSDDSSSESEDEKPAVKPTAPSKKAPAKNGTGSAPSKKGKPASSSSESSEDSSSDEEELSAKKPQKVIVEKQKKAAPVPKKESSSDDDSSESEDEKPVPKAAVPSKKTPAKNGAPAKKGKPASSSSDSESSEDDSEDEKPAAKNGAVTAPANKGKPAAVSDSSDSSSDEEDVPKKISATTKPPASSVAPAKKVESSDDDDSSEEDSDDDDDVKPAAAAVSKPSAVLKKKVDSSDSDDSSSEEEDNKKTAKPASNAKSLPLSKQPVKTSKTSDSDEEESSDSESEEEKQGKKMEIDDDDSSDESEQPQKKAVKSAKESSESSDEDSEEESEEEQSKTPQKRARDVEMVDASSGKKTPHTPTTPNAESGVSNTLFVGNLAYSVDRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATVEAAQKALLELNGQELHNRPLRLDSARVRDRSSYTPNSSNWNNSSQKSGRGQSQTLFVRGFDKSLGEDEIRASLEEHFGSCGEVTRVSIPKDYETGAVKGFAYMDFSDADGLSKALELHETELGGYTLSVDEAKPRDTQGSGGRGGGGRGGGGRFGGGRGGSGGRFGGSGGGRFGGGRGGSGGRFGGGRGGGGRGRGPPSRSFAAEGKKTKFADED* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00430 700 CDD RRM1_NUCLs 436 513 IPR034349 -
Phac11g00430 700 SMART rrm1_1 539 615 IPR000504 GO:0003723
Phac11g00430 700 SMART rrm1_1 436 508 IPR000504 GO:0003723
Phac11g00430 700 MobiDBLite consensus disorder prediction 54 83 - -
Phac11g00430 700 Gene3D - 519 654 IPR012677 -
Phac11g00430 700 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 435 512 IPR000504 GO:0003723
Phac11g00430 700 MobiDBLite consensus disorder prediction 54 432 - -
Phac11g00430 700 Coils Coil 22 63 - -
Phac11g00430 700 MobiDBLite consensus disorder prediction 1 34 - -
Phac11g00430 700 MobiDBLite consensus disorder prediction 348 384 - -
Phac11g00430 700 MobiDBLite consensus disorder prediction 292 315 - -
Phac11g00430 700 Gene3D - 326 518 IPR012677 -
Phac11g00430 700 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 538 619 IPR000504 GO:0003723
Phac11g00430 700 MobiDBLite consensus disorder prediction 514 537 - -
Phac11g00430 700 MobiDBLite consensus disorder prediction 316 332 - -
Phac11g00430 700 MobiDBLite consensus disorder prediction 120 166 - -
Phac11g00430 700 CDD RRM2_NUCLs 539 617 IPR034350 -
Phac11g00430 700 MobiDBLite consensus disorder prediction 506 537 - -
Phac11g00430 700 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 540 612 IPR000504 GO:0003723
Phac11g00430 700 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 437 506 IPR000504 GO:0003723
Phac11g00430 700 MobiDBLite consensus disorder prediction 397 415 - -
Phac11g00430 700 SUPERFAMILY RNA-binding domain, RBD 530 649 IPR035979 GO:0003676
Phac11g00430 700 MobiDBLite consensus disorder prediction 418 432 - -
Phac11g00430 700 SUPERFAMILY RNA-binding domain, RBD 427 535 IPR035979 GO:0003676
Phac11g00430 700 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 578 671 - -
Phac11g00430 700 MobiDBLite consensus disorder prediction 611 700 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00430 Phac-Chr11 3122974 3128286 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00430 434 613 Eukaryotic Initiation Factors Gene Family AT4G34110 26.519 6.95e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00430 K11294 - gmx:100779929 483.796