Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00350 ATGGAAGCTATTTTCGTCACCAAACCAGCTTCTCACTCTCACTTCAAAACTAGATTCTCTTCAAACCCCAAACACTTCTCTAAACAACAATCCTTTCTCCCCATCCCAAACAACCCCACGCGCTTCCGCCTCGTCATCGCCGCACTCCAAAACCAACAACAAGAAGCAGCAGCTGCCAAAGACACCGAAGACGAGTCCTATGGTGAAGTCAAAGGCATCATCGGCAGCAGAGCCCTCGACACCGCCGCCGGAATGGAGTACCTCATCGAGTGGAAAGACGGCCACGCGCCGTCATGGGTTCCGGCAGACTTCATCGCCAAAGACGTCGTCGCCGAGTACGAGACCCCGTGGTGGACCGCTGCGAAGAAGGCCGACGAGTCCGCGCTGAGGAACCTCGTCGAATCCGGCGACGGCCGCGATGTCGACGCTGTGGACGCCGACGGCCGCACCGCGCTCCTCTTCGTAGCGGGACTCGGCTCGGAACCGTGCGTGAAGCTGCTTGCGGAAGCCGGCGCGAATCTGGATCACCGCGACCGCAGCGGGGGTCTCGCGGCGCTGCACATGGCGGCGGGGTACGTGAGGCCCGGCGTGGCGAAGTTGCTGCTGGATTTCGGCGCGGATCCCGAGGTGGCGGATGACCGTGGAAGAACGGCGTTAGATCTGGCGCGGGAGATTCTGAAGGCGACGCCGAAGGGGAATCCGATGCAGTTCGGGCGCAGGATTGGACTCGAGGGCGTGGTTAGGGTTTTGGAAGGGGCTGTGTTCGAGTACGTGGAGGTGCAGGAGATTCTTGAACGGAGAGGGAAGGGAGAAAATTTGGAGTACCTTGTGCGGTGGAAGGACGGCGAGGCCAATGAGTGGGTGAAGGCGAAGTTTGTGGCGGAGGATTTGGTCAGAGACTACGAGGCTGGTCTTGAATACGCGGTGGCCGAGGCGGTGCTCGCGAAAAGGGTGGCGGATGAAGGGACGCCGGAGTTTTTAGTTAAATGGGCGGATTTGGATGAGCCCACTTGGGAGCCCCAGGAGAATGTGGACCCTGACCTTGTCAAAGCGTTCGAGGAAACTAACAATCAGGCCCAGCCCAATAGTAATGGGCCTGCTGTCGTCGTTTCCAATCAAGATAGCCCATAA 1131 0.5915 MEAIFVTKPASHSHFKTRFSSNPKHFSKQQSFLPIPNNPTRFRLVIAALQNQQQEAAAAKDTEDESYGEVKGIIGSRALDTAAGMEYLIEWKDGHAPSWVPADFIAKDVVAEYETPWWTAAKKADESALRNLVESGDGRDVDAVDADGRTALLFVAGLGSEPCVKLLAEAGANLDHRDRSGGLAALHMAAGYVRPGVAKLLLDFGADPEVADDRGRTALDLAREILKATPKGNPMQFGRRIGLEGVVRVLEGAVFEYVEVQEILERRGKGENLEYLVRWKDGEANEWVKAKFVAEDLVRDYEAGLEYAVAEAVLAKRVADEGTPEFLVKWADLDEPTWEPQENVDPDLVKAFEETNNQAQPNSNGPAVVVSNQDSP* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00350 376 SUPERFAMILY Chromo domain-like 256 303 IPR016197 -
Phac11g00350 376 SUPERFAMILY Chromo domain-like 306 355 IPR016197 -
Phac11g00350 376 ProSiteProfiles Ankyrin repeat region circular profile. 147 179 - -
Phac11g00350 376 ProSiteProfiles Ankyrin repeat region circular profile. 181 213 - -
Phac11g00350 376 ProSiteProfiles Ankyrin repeat profile. 181 213 IPR002110 GO:0005515
Phac11g00350 376 SMART ANK_2a 147 176 IPR002110 GO:0005515
Phac11g00350 376 SMART ANK_2a 181 210 IPR002110 GO:0005515
Phac11g00350 376 SMART ANK_2a 112 143 IPR002110 GO:0005515
Phac11g00350 376 Pfam Ankyrin repeats (many copies) 167 222 IPR002110 GO:0005515
Phac11g00350 376 Pfam Chromo (CHRromatin Organisation MOdifier) domain 310 354 IPR023780 -
Phac11g00350 376 MobiDBLite consensus disorder prediction 337 376 - -
Phac11g00350 376 Gene3D - 304 356 - -
Phac11g00350 376 ProSiteProfiles Chromo and chromo shadow domain profile. 308 364 IPR000953 -
Phac11g00350 376 SUPERFAMILY Chromo domain-like 64 117 IPR016197 -
Phac11g00350 376 Gene3D - 112 253 IPR036770 -
Phac11g00350 376 SUPERFAMILY Ankyrin repeat 113 224 IPR036770 -
Phac11g00350 376 Gene3D - 254 303 - -
Phac11g00350 376 Gene3D - 64 111 - -
Phac11g00350 376 ProSiteProfiles Ankyrin repeat profile. 147 179 IPR002110 GO:0005515
Phac11g00350 376 PANTHER MYOTROPHIN 48 235 - -
Phac11g00350 376 SMART chromo_7 256 306 IPR000953 -
Phac11g00350 376 SMART chromo_7 307 357 IPR000953 -
Phac11g00350 376 SMART chromo_7 66 118 IPR000953 -
Phac11g00350 376 MobiDBLite consensus disorder prediction 353 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00350 Phac-Chr11 2189628 2191370 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00350 129 222 CAMTA Transcription Factor Family AT5G09410 36.000 6.79e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00350 K12271 - gmx:100818382 637.876