LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac11g00341	ATGGCTTTCTTCCTTCTCTTCTTCCTCTCCCTTCTTGCTTCTTCTGCCACTGCTTGCGATCGCTGCCTGCACCAATCCAGGGCTTCCTTTTTCTCCAGAGCTTCTGTTCTTTCATCTGGGGCATGTGGGTATGGCTCTTTGGCACTAGACATAAGTGGTGGACACCTTGCAGGTGGTGCGGCCTCTCTCTTCAAAAACGGAGCCGGTTGTGGTGCTTGCTTTGAGATAAGATGCAAGAACCCGAGTTTTTGCAGCAAAGAGGGTACCAGAGTGGTGTTGACTGATGATCTTAGTCACAACAATGAAACTGACTTTGTGCTGAGCAAAAGAGCTTTCTCAGGCATGGCTCAGAAGGGAAAGGGCCGAGAAATATTGAAACTTGGCATTGTTGACATTGAATACAAGAGAGTACCCTGCAACTACCAGAATCAGAATTTGGCGGTCCGTGTAGAAGAATCAAGCAAGAATCTTGATTATTTAGCCATTAAATTTTTGTACCAAGGAGGTCAAACAGAGATAGTAGCCGTTGATGTGGCAGAGGTGTGTTGTCAGACACAGAACATTATAGTATTTTGTTTTTTGTTTTGA	588	0.4507	MAFFLLFFLSLLASSATACDRCLHQSRASFFSRASVLSSGACGYGSLALDISGGHLAGGAASLFKNGAGCGACFEIRCKNPSFCSKEGTRVVLTDDLSHNNETDFVLSKRAFSGMAQKGKGREILKLGIVDIEYKRVPCNYQNQNLAVRVEESSKNLDYLAIKFLYQGGQTEIVAVDVAEVCCQTQNIIVFCFLF*	196

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac11g00341	195	PRINTS	Major pollen allergen Lol pI signature	58	69	IPR005795	GO:0005576\|GO:0019953
	Phac11g00341	195	PRINTS	Major pollen allergen Lol pI signature	165	180	IPR005795	GO:0005576\|GO:0019953
	Phac11g00341	195	PRINTS	Major pollen allergen Lol pI signature	78	88	IPR005795	GO:0005576\|GO:0019953
	Phac11g00341	195	PRINTS	Major pollen allergen Lol pI signature	116	131	IPR005795	GO:0005576\|GO:0019953
	Phac11g00341	195	ProSiteProfiles	Expansin, family-45 endoglucanase-like domain profile.	39	144	IPR007112	-
	Phac11g00341	195	CDD	DPBB_EXLA_N	17	141	-	-
	Phac11g00341	195	Gene3D	-	140	189	IPR036749	-
	Phac11g00341	195	SMART	dpbb_1	57	134	IPR007112	-
	Phac11g00341	195	PANTHER	EXPANSIN-B3	11	180	-	-
	Phac11g00341	195	PRINTS	Expansin/Lol pI family signature	38	56	IPR007118	GO:0005576
	Phac11g00341	195	PRINTS	Expansin/Lol pI family signature	127	143	IPR007118	GO:0005576
	Phac11g00341	195	PRINTS	Expansin/Lol pI family signature	60	78	IPR007118	GO:0005576
	Phac11g00341	195	Pfam	Lytic transglycolase	58	134	IPR009009	-
	Phac11g00341	195	Gene3D	-	10	139	IPR036908	-
	Phac11g00341	195	SUPERFAMILY	Barwin-like endoglucanases	8	143	IPR036908	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac11g00341	Phac-Chr11	2143899	2146572	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac11g00341	3	181	Expansin Gene Family	AT3G45960	56.906	3.93e-62	192

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac11g00341	-		-	gmx:100305884	286.189