Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00328 ATGGAGTTCGTGGGGAAGACCGTTAAGAAAGAGGTGAAGGGGGTTGGGATTGTTTCGGGAACAGTGAAATCGTACGACCCTTCCTCTGGTTTTTTCGAGATCCTTTACGAAGAAGGTGATTCGGAGGAGTTGGAGTCCTCTGACGTCGCTTCTCTCTTGCAATTGCAACCGGAGACTGCCAAGGCCAAGCCTCGAGTCGGTCGGAAACCTAAGAAGCGTCGCCGCGTCGAGCGGCAGGGCGATGCTGGAGCAGGTTCAGGTAATGTTCGAGAGAGTTTGGCGGCGGAGGGTAGTGATTTAAGGGGGGTTTTGGATGGGGGTGTTTCTTCTGCTAGTGGGGGTTTGGGTTTGGACAGTGGTGAGCTAGAGAGAAATTTGGATGGTGTAAGTAAGAATAGAGGGAGTCCTGAGGGCAATGTTAATGGGACTGAGGAGGTAAATGGGGTTAGAGAAAGTCTGAGAGAGGAAATTGGCTTAGAAGATAGTTTGAACAAGAGTTTATCTGGAAATGTTAGTTGTGTTAAAGATGGACTTGATTTGAATGCTAGGCTTAATCTGGATGAGGATTTAAATTTAAATGATGGGTGTAGTTTGCCTCTTGACACTGAGGATGGTTTGAAGAGAAGAGATTGCATTGATTTAAATTTGGATGTGAGTAATGAGGATGATGTTGGTGGCCCGAATGTGGGTCACTTGGGTTCGGGAGCAGAGGCAATGCAGCGGGAATGTAACTTTGATTTGAATGTGGAGGTAGTTTGTGAAGAAGGTAAGGAAACACGGTGTGATGATGACGGAAATGGACATTCTGAGGTGGGTAATGTTTTGTTTGGTAAGATGGGGCTGCCCCAAAAGGAAGAGATATATGTTAATAATAGTTCTGTGGAAGATGATGGTATGAATGGTAATTTGAATCACGCCTTTGATGCGGTTAAATTGGAGGGAATTCATGTTTCTTTTGATCATCCATCTAAAGATGGTTCTTGGTGTTTGGTTGAGAAAAATGGAGGAGACAGTCGCAAAGAAGACACAGGGGCTATTGATTCTCTTCAGATTTCAAGTGCAATATCTGTTAGGGATTCAGATTCTGGGGAGGCTCAGCAAGTTGATTGTCCTTCTGAAGGTGGTATTGCCATAATTCATAAATACCAAGATGATGCAGGAACTCCTTGCAAACAAGAAAAATTCCAAGATGTTCCAGGAAGTCCACGCAAACGAGAAAATAGCAGAAGGAAAAGAAGAAAGTTATCAGATAATCCAGAAGCCGTGCCCGAGACAGTTTTAAGGAGGAGTTCTCGTCGGGCATCAGCTATAAAACAGGTTTCAAGCACCGTTGAAGTGGAAGTGGCTGATGATCCTGTGGTAACCTTGGGAACCGATGCCTTAACAGAAGAAAAACCTCTAATCCCTGGTTCTCAGAAATCTGAGCAATATAACGATTGTCTGAAGTACAAGCTATACAACAATCCTCTTCCAAAGCTGCAATTGCCCCCGTCTTCTACAAATTTGAATTTAGACGATGTTCCTGTTCTTGAACTTTTTTCTATTTATGCCTGTTTCAGATCTTTCAGTACTTTATTATTTTTGAGTCCATTTGAGTTGGAGGATCTTGTAGCTGCACTGAAGTCTGAAATCCCAAGTATATTATTTGACAGCATTCATGTTTCTATTTTGCAAACTCTGAGAAAGCATTTGGAATACCTTTCCAATGAGGGTTGCGAATCTGCATCCAATTGCCTGAGGAATCTTAACTGGGATTTTTTGGACCTGGTCACATGGCCTATTTTCATGGCGGAGTACCTTCTGATTCATGGCTCAGGGTTTAAAACTGGTTTTGATCTTAAACGTCTAATGTTCATAACTGATTACTACAAACAACCCGTAATTGTGAAGGTCGAGATTCTCCAGTACCTGTGTGATGAGATGATTGAATCGGAAGCTATAAGGTCAGAGCTTAACAGAAGATCTTTGGTGGCGGAGACTGATATGGGTTTTGATCAGAATATGTATTTTGACTCTTGCAAGAAAAGAAGAGCTGTAATGGATGTGTCTGGTGGCTCCTGCTTGACTGAGGAGAATGTAGATGACACAACTGACTGGAACAGTGACGAATGTTGCCTGTGCAAGATGGATGGTAGTTTAATATGCTGTGATGGTTGCCCTGCAGCATTCCACTCACGATGTGTTGGAATTGCCAGTGACAAACTGCCTGAAGGTGACTGGTATTGCCCTGAGTGTGGAATTGGCAAACACAGGGCTTCGATGAAGTCACGAAGGTCACTTCGAGGAGCAGACTTATTAGGGATGGATATGGATGGCAGTGTCTATTTCAACAGCTGCGGTTACCTGTTAGTGTCAAGCTCATCTGAAGCAGGGCCATTGTTCTATTATTACCACCAAAATGATATACATGTAGTAATTGAAGCTCTAAAATCTATGGGTCCTTTATATGGAGGCATACTAATGGCTATCTATAAGCATTGGGATATCAGAGCTGAGTTGAGTGTGGGGGATAGTGTCTTGAATCATATTTCCGGCAAGAACATGCAGATGAAGGGAGAATATTCTACTTTGTATACATCTTTGGCACCTTTTACTTCAGAGACATGTTTGAACAAGAAGCAGGCCAATGATCAAGGAAAGTTGGATGAAAATTCAACTATTGACTGTTGTATGCAACTTGGCCAAGACTTTCCAAAAGTTGGGAACTGCCTAGACTCGACGACCACCATAGAAAGTCCTTGCGTTGCTTCAGATGGATCAGCTGATACCACACAGACGAGAACAGGCATCAACAATGTTCAGATGTATGGGCTCAATGATTTCAGTAGATGTAATGAATCCTTGAATCAGCCAGGAGTACCAGAAAGACTACATCCTGATTGTTCTTTGACATCTTCCAGCTTGGATGTGGGACATAAAATAAACTTAAGATCTGTAGGTGCTAGCAGTACCCCCTCTCCGGACAGTAAGGATACTTCAGAAGCACCTTGTGGAATTGACTACGTAAACTATTATAGCTTTGCCCGAACAGCTTCATTTGTTGCGCAGGAGTTGATGTGTAAGTTGCCTGAAAAGACGAATAAGATTCTTGCAATGTCTGAAGAAGAATTTATTTCAGATCAAGCAAAGGTCATTATGAAGAAATCTACCAACTTTTGTTGGCCAAGTATTCCCAACCTGGATGCAGCTGCACAAAAAGAAAAATGTGGATGGTGCTTTACTTGCAAAGTTGCTAATGAAGATAGGGATTGTTTGTTTAATTCTGTTGTGAAGCCTGTTTGGGAAATGTCTAATAGCACTTTGGTTGGGCTTCAACCCAGCAATATCCAGAATGGACATCTTAGAGATATCATATGTCTTATCTTCTCTCTTGAGGTTCGGTTACGTGGGCTTTTACTGGGTCCATGGTTGAATCTGCATCAAACTAATTTTTGGCATAAGGATCTTCTGACGACATCTGATTTTCTTGGTGTTAAGCGATTATTGCTTCTTTTAGAATCCAATTTGCGGCCTTTTGCTCTTTCAGCAGATTGGTTAAAGCATGTGGATTCTGTTCCTACAATGGGATCCGCTGTTCATATTGTGGTTAATTCATCACGCGCATCTTCCAGACATGGTATTGGAAAGAAAAGGGTCAGGAATTCAGATACTGAAACCAGTTCATCTTCAAATGGTGCTAGTGGTTTGGGGATGTACTGGTGGAGAGGTGGCAGGCTTTCCCGAAAATTGTTTAATTTGAAGGCTTTGCCTCACTCCTTGGTTACCAAGGCTGCTAGACAAGGTGGGTGTAGGAAGATACCAGGAATTTTATATCTTGAGAATTCAGACTTTGCACGGAGAAGCAGATTTGTTGCTTGGCGAGCAGCTGTTGAGATGTCAACAAGCGCTGAGCAGCTTGCTTTACAGGGTAGAGATGAAAGCTAG 3924 0.4269 MEFVGKTVKKEVKGVGIVSGTVKSYDPSSGFFEILYEEGDSEELESSDVASLLQLQPETAKAKPRVGRKPKKRRRVERQGDAGAGSGNVRESLAAEGSDLRGVLDGGVSSASGGLGLDSGELERNLDGVSKNRGSPEGNVNGTEEVNGVRESLREEIGLEDSLNKSLSGNVSCVKDGLDLNARLNLDEDLNLNDGCSLPLDTEDGLKRRDCIDLNLDVSNEDDVGGPNVGHLGSGAEAMQRECNFDLNVEVVCEEGKETRCDDDGNGHSEVGNVLFGKMGLPQKEEIYVNNSSVEDDGMNGNLNHAFDAVKLEGIHVSFDHPSKDGSWCLVEKNGGDSRKEDTGAIDSLQISSAISVRDSDSGEAQQVDCPSEGGIAIIHKYQDDAGTPCKQEKFQDVPGSPRKRENSRRKRRKLSDNPEAVPETVLRRSSRRASAIKQVSSTVEVEVADDPVVTLGTDALTEEKPLIPGSQKSEQYNDCLKYKLYNNPLPKLQLPPSSTNLNLDDVPVLELFSIYACFRSFSTLLFLSPFELEDLVAALKSEIPSILFDSIHVSILQTLRKHLEYLSNEGCESASNCLRNLNWDFLDLVTWPIFMAEYLLIHGSGFKTGFDLKRLMFITDYYKQPVIVKVEILQYLCDEMIESEAIRSELNRRSLVAETDMGFDQNMYFDSCKKRRAVMDVSGGSCLTEENVDDTTDWNSDECCLCKMDGSLICCDGCPAAFHSRCVGIASDKLPEGDWYCPECGIGKHRASMKSRRSLRGADLLGMDMDGSVYFNSCGYLLVSSSSEAGPLFYYYHQNDIHVVIEALKSMGPLYGGILMAIYKHWDIRAELSVGDSVLNHISGKNMQMKGEYSTLYTSLAPFTSETCLNKKQANDQGKLDENSTIDCCMQLGQDFPKVGNCLDSTTTIESPCVASDGSADTTQTRTGINNVQMYGLNDFSRCNESLNQPGVPERLHPDCSLTSSSLDVGHKINLRSVGASSTPSPDSKDTSEAPCGIDYVNYYSFARTASFVAQELMCKLPEKTNKILAMSEEEFISDQAKVIMKKSTNFCWPSIPNLDAAAQKEKCGWCFTCKVANEDRDCLFNSVVKPVWEMSNSTLVGLQPSNIQNGHLRDIICLIFSLEVRLRGLLLGPWLNLHQTNFWHKDLLTTSDFLGVKRLLLLLESNLRPFALSADWLKHVDSVPTMGSAVHIVVNSSRASSRHGIGKKRVRNSDTETSSSSNGASGLGMYWWRGGRLSRKLFNLKALPHSLVTKAARQGGCRKIPGILYLENSDFARRSRFVAWRAAVEMSTSAEQLALQGRDES* 1308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00328 1307 SMART PHD_3 703 746 IPR001965 -
Phac11g00328 1307 ProSiteProfiles Zinc finger PHD-type profile. 701 748 IPR019787 -
Phac11g00328 1307 MobiDBLite consensus disorder prediction 1205 1225 - -
Phac11g00328 1307 ProSiteProfiles DDT domain profile. 506 566 IPR018501 -
Phac11g00328 1307 MobiDBLite consensus disorder prediction 388 404 - -
Phac11g00328 1307 SUPERFAMILY FYVE/PHD zinc finger 689 750 IPR011011 -
Phac11g00328 1307 PANTHER PHD FINGER FAMILY PROTEIN 2 1304 - -
Phac11g00328 1307 ProSitePatterns Zinc finger PHD-type signature. 704 745 IPR019786 -
Phac11g00328 1307 MobiDBLite consensus disorder prediction 47 91 - -
Phac11g00328 1307 MobiDBLite consensus disorder prediction 112 147 - -
Phac11g00328 1307 Pfam DDT domain 510 562 IPR018501 -
Phac11g00328 1307 MobiDBLite consensus disorder prediction 132 146 - -
Phac11g00328 1307 MobiDBLite consensus disorder prediction 388 428 - -
Phac11g00328 1307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 689 768 IPR013083 -
Phac11g00328 1307 CDD PHD1_AIRE 703 745 - -
Phac11g00328 1307 SMART testlast3 506 566 IPR018501 -
Phac11g00328 1307 Pfam PHD-finger 704 745 IPR019787 -
Phac11g00328 1307 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 630 652 IPR028942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00328 Phac-Chr11 1994107 2000175 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00328 1 1304 PHD Transcription Factor Family AT5G12400 38.386 0.0 743
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Phac11g00328 DDT 3.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00328 - - vun:114169688 2202.17