Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00279 ATGGCAGATGAAGACGACGACGAGGTTCTCGGTTGCGCCACCACCGCTTCCGGTCAATCCGCCTCCACCAACAGCTTGCCACCTCCCGCCGACAACACGCTGCTCAAATTGAACCATCTCGACTTACACGCTGATGATGCTGGATCACAAGCCTCTCTTGCTGGCAAGAAGAAAAAGAGAGGCCAACGCGCAGTCGGACCTGATAAGAGTGGACGAGGTCTCCGCCAATTTAGCATGAAAGTGTGTGAGAAGGTAGAAAACAGGGGAAGAACAACTTACAATGAGGTGGCGGATGAGCTTGTTGCTGAATTTTCTGATCCAACCACTAGTGAATTAACCCCTGATCAGCAACAATATGATGAGAAAAACATCCGTCGAAGGGTCTATGATGCTCTGAACGTTCTCATGGCGATGGACATTATTTCTAAGGATAAAAAGGAAATCCAATGGAAGGGACTTCCTCGTACTAGTGTGAATGATATTGAAGAAATAAAGACAGAGCGTCTTGGGCTCAGGAATAGAATTGAAAAGAAAACAGCTTATCTGCAGGAGCTCGAGGAGCAATTCGTAGGCCTTCAGAACCTTATTCAACGAAATGAGCAGTTATATAGCTCAGGAAATCCTCCCAGTGGAGGTGTGTCTTTGCCTTTTATTCTGGTACAGACACGTCCTCATGCAACTGTAGAAGTGGAAATATCAGAAGATATGCAGCTTGTTCATTTTGATTTCAATAGTACTCCTTTTGAGCTGCATGACGACAATTATGTTCTCAAGGCAATGAAATTTTGTGAGAGACCACAGGAAGAAAATACGACCCACAATTTAACCGATGGAGGTGAAGGTTCTAGCTTGTCTGGCTTGTGCCAACCACAGGCTCCTCCTACAAATCTAAAAGTGTCAAATAGGCCTCCAACCTCACCTCCTCTCCCTGGCATATTAAAGGCAAGGGTTAAGCAAGAGCATTAA 966 0.4555 MADEDDDEVLGCATTASGQSASTNSLPPPADNTLLKLNHLDLHADDAGSQASLAGKKKKRGQRAVGPDKSGRGLRQFSMKVCEKVENRGRTTYNEVADELVAEFSDPTTSELTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSVNDIEEIKTERLGLRNRIEKKTAYLQELEEQFVGLQNLIQRNEQLYSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQEENTTHNLTDGGEGSSLSGLCQPQAPPTNLKVSNRPPTSPPLPGILKARVKQEH* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00279 321 Gene3D - 65 157 IPR036388 -
Phac11g00279 321 FunFam Transcription factor-like protein DPB 158 282 - -
Phac11g00279 321 Pfam Transcription factor DP 160 273 IPR014889 -
Phac11g00279 321 Gene3D Transcription factor DP 158 278 IPR038168 -
Phac11g00279 321 MobiDBLite consensus disorder prediction 1 32 - -
Phac11g00279 321 SUPERFAMILY "Winged helix" DNA-binding domain 72 153 IPR036390 -
Phac11g00279 321 FunFam Transcription factor-like protein DPB 64 157 - -
Phac11g00279 321 CDD DP_DD 157 260 IPR014889 -
Phac11g00279 321 MobiDBLite consensus disorder prediction 13 31 - -
Phac11g00279 321 PIRSF Txn_factor_DP 8 321 IPR015648 GO:0005667|GO:0051726
Phac11g00279 321 SMART DP_2 159 319 IPR014889 -
Phac11g00279 321 PANTHER TRANSCRIPTION FACTOR DP 18 274 IPR015648 GO:0005667|GO:0051726
Phac11g00279 321 Pfam E2F/DP family winged-helix DNA-binding domain 72 152 IPR003316 GO:0005667|GO:0006355
Phac11g00279 321 SUPERFAMILY E2F-DP heterodimerization region 159 273 IPR037241 -
Phac11g00279 321 MobiDBLite consensus disorder prediction 49 73 - -
Phac11g00279 321 MobiDBLite consensus disorder prediction 269 321 - -
Phac11g00279 321 Coils Coil 168 202 - -
Phac11g00279 321 MobiDBLite consensus disorder prediction 272 299 - -
Phac11g00279 321 SMART E2F_TDP_2 69 152 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00279 Phac-Chr11 1640445 1643996 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00279 70 270 E2F-DP Transcription Factor Family AT5G02470 54.455 8.70e-77 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Phac11g00279 DP 4.8e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00279 K04683 - gmx:100798342 572.392