Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00112 ATGGAAGAGGAGGGGTGGAACGGGAAGAGACCCTCCGAGCCACGTCCCTGCACGGAGTGCGGCAAGAAGTTCTGGTCTTGGAAGGCCCTCTTCGGGCACATGCGGTGCCACCCTGAGCGTCAATGGAGAGGGATCAACCCTCCCCCCAATGCAAGAAGACATCAGCAGCATCATCATCATCAGCAACCACAACAACAGCAGCAACATACCATGATAATGACCCAGGAAGACCACGAGGTCGCTGCATGTTTGCTTCTACTTGCCAATTCGAACAAAGAGAGAGAGAAAGAGAAAGGGAAAGAGAAAGAGGAAGAGTTTCATCAGTGGCAGTTCGAGTGCTCGAGTTGCAACAGGGTGTTCGGATCGCACCAGGCTCTGGGAGGGCACCGTGCGAGTCACAAGAACGTGAAGGGGTGTTTTGCGAACACTGGTAATGCAGGCATAGGCTTAGGCTTAGGCATAGGGAGTAGTGGGAAGTGTGAAGAGGAGAATGTGAACATGAGTGGTGGTGATGGGCACAAGTGCAGCATATGCATGAGGGTGTTCTCCACAGGGCAAGCACTTGGTGGGCACAAGAGGTGCCATTGGGAGAATCAGAAAGGTGATAACCTTCTTCTTCTTCACTCACCCAAGTCCTCCATAGACTTGAACTCTCCTCCTCTCACTCTCGATTTGAGGTTGGGACTCTAG 690 0.5261 MEEEGWNGKRPSEPRPCTECGKKFWSWKALFGHMRCHPERQWRGINPPPNARRHQQHHHHQQPQQQQQHTMIMTQEDHEVAACLLLLANSNKEREKEKGKEKEEEFHQWQFECSSCNRVFGSHQALGGHRASHKNVKGCFANTGNAGIGLGLGIGSSGKCEEENVNMSGGDGHKCSICMRVFSTGQALGGHKRCHWENQKGDNLLLLHSPKSSIDLNSPPLTLDLRLGL* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00112 229 ProSitePatterns Zinc finger C2H2 type domain signature. 175 195 IPR013087 -
Phac11g00112 229 SMART c2h2final6 173 195 IPR013087 -
Phac11g00112 229 SMART c2h2final6 15 37 IPR013087 -
Phac11g00112 229 SMART c2h2final6 111 133 IPR013087 -
Phac11g00112 229 Gene3D Classic Zinc Finger 108 195 - -
Phac11g00112 229 MobiDBLite consensus disorder prediction 39 71 - -
Phac11g00112 229 SUPERFAMILY beta-beta-alpha zinc fingers 111 195 IPR036236 -
Phac11g00112 229 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 42 IPR013087 -
Phac11g00112 229 ProSitePatterns Zinc finger C2H2 type domain signature. 17 37 IPR013087 -
Phac11g00112 229 SUPERFAMILY beta-beta-alpha zinc fingers 13 40 IPR036236 -
Phac11g00112 229 ProSiteProfiles Zinc finger C2H2 type domain profile. 173 200 IPR013087 -
Phac11g00112 229 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
Phac11g00112 229 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 138 IPR013087 -
Phac11g00112 229 Pfam C2H2-type zinc finger 111 134 - -
Phac11g00112 229 Pfam C2H2-type zinc finger 16 39 - -
Phac11g00112 229 Pfam C2H2-type zinc finger 173 197 - -
Phac11g00112 229 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 9 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00112 Phac-Chr11 741518 742257 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00112 11 229 C2H2 Transcription Factor Family AT4G35280 49.784 2.75e-69 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac11g00112 zf-C2H2_6 6.7e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00112 - - vun:114195192 375.941