Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00107 ATGCAACTATTCCAAAACAAAAATAAACACTTTCTCAACATTACAATGAGTAACAGTATGTGTTATGTCACTACGTTGCTGCTTTTGCTGGCTATGTGTGAAGCCACTTCAGGGCTCACACAAGCTGATGCACTTCTTAGGTGGAAACAAAGTCTACCTCACCAACCAATTCTGGATTCCTGGGTGATCAACTCCACTGCAACAACTCAAACTCCATGTTCATGGCGAGGTATCACTTGTGATTCCCAAGGCACTGTCACTACAATCAACTTGGCTTATACTGGACTTGCAGGTACCCTTCACAATCTGAACTTTTCTGTTTTTCCAAACCTTCTTCGTCTTGACCTCAAAGTAAACAATCTCACTGGCTCCATACCACAAAACATTGGGGTGCTCTCAAACCTCCAGTTCCTTGACCTTTCCCAAAACTATCTCAATGGCACTCTGCCCCTTTCCATTGCCAATCTGAGTCAAGTTTTTGAGCTTGATGTTTCAAGAAATGATATATCAGGGGTATTAGACCCTGCCCTTTTTCCTGATGGATCTCACACCCCCAAAACTGGCCTCATTGGTATCAGGAACCTTCTCTTCCAAGACACCTTGCTTGGTGGAACAATCCCAAATGAAATAGGGAACATTAGAAACTTGACTCTGCTAGCTCTAGATGGAAACTACTTCCATGGTCCTATTCCCTCATCTCTAGGAAACTGCACACATTTAAGCATTCTAAGAATGCCTGAAAACCAACTCTCAGGTCCAATACCTCCAAGTATTGGTAAATTAACCAATCTAACCGATGTGCGCTTTTTCTCCAACAACTTAAATGGTAGTGTTCCCCAAGAATTTGGAAACTTGTCTTCCTTGATTGTGCTGCATCTTGCTGAGAACAACTTCGTTGGTGAATTACCACCAGAGGTGTGCAAAAGTGGGAAACTTGTAAATTTTAGTGCAGCCTTTAATAGTTTCACTGGCCCAATTCCAAGAAGCCTCAGAGACTGTCCTTCCTTGTACAGGGTTCGACTTGAATACAACAGGCTCACAGGTTTTGCTGATCAGGATTTTGGTGTGTATCCCAACCTCACTCACATGGACTTCAGCCATAACAGGGTGAAAGGTAACCTCACTGCAAATTGGGGTGGCTGCCAAAACCTGCAACATCTGAGCATGGCTGGGAATGGAGTAAGTGGCAACATTCCAAGTGAGATTTTTCAGTTGGAACAACTACAAGAGCTTGATCTATCCTCCAACCAACTATCAGGAGAGATTCCTCCAATGATAGGAAACTCCAACTTGTATAAATTAAATTTGTGTGAAAACAAACTCTCTGGCATGGTACCAGTAGAAATTGGAAAGCTTTCCAATTTGGGATCCTTAGACCTTTCTATGAACATGCTACTAGGTCCAATCCCCAATCAGATAGGGGAGCTCTCCAACTTGCAGAATTTAAATCTTAGCAACAACAAGTTTAATGGCACAATCCCCTACCAAATTGGAAACCTGGCAGATTTACAATATTTTTTGGATTTGAGTTACAATTCACTTTCAGGAGATATTCCCAGTGATCTTGGGAGGCTTTCAAATTTGATAACCTTGAATATCTCTCACAACAATCTGTCAGGTTCAATCCCTCACTCCCTTGGTGAACTGGTGAGTTTGTCAGTCATCAACCTCTCCAACAATAACTTGGAGGGTCCAGTTCCCAATGGTGGCATATTCAACTCTTCTTATCCCCTGGATTTGAGCAACAACAAAGATCTATGTGGAAATATTGAAGGTTTGCAACCCTGTAATGTCTCTCTCACTAAACCTGATGGTGGTGGATCAAGTAAAAGGAACAAGGCTGTGATCCTTATTGTGGCTTCTCTGGGAGGTGCTTTTTTTATTTCTTTGGTGTTAGTTGGGATTTTTTTCTTTATCTATAAGAGAAAATCAAGAGCTCCAAGGCAAAGAAACTCGTTCAGTAGACCGAATCCATTTTCAATTTGGTTCTTCAATGGGAGAGTTGTGTATAGAGACATAATTGAAGCTACCAAGAATTTTGACAGCCAATATTGCATTGGGGAAGGAGCACTGGGAAAAGTTTACAAAGCTGAGATGTCAGGAGGTGAAGTATTTGCTGTGAAAAAGTTCAAGTGTGATTCAGAAAACTTAGACATGGAGAGAATAAAATCCTTTGAGAATGAGGTAGAAATCATGACAGAAACACGCCACAGAAACATTGTGAAGCTTTATGGATTTTGCTCTCAAGGGATGCACACCTTTCTGATTTATGAGTACATGGAGGGTGGCAACTTAGAGGAGATGCTGAGAGATGACAAGGAAGCATTGAAACTGAATTGGCTCGAAAGGGTTGATATCATCAAGAGTGTAGCAAGTGCTTTGTCCTACATGCATCATGAATGTGCTTCACCTTTAATTCACAGAGACATATCAAGCAAGAACATTTTGCTGTCCTTCAATCTTTCAGCTCATGTCTCAGATTTTGGAACTGCAAGGTTTCTGAAGCCGGATTCTCCTATTTGGACATCATTTGCCGGCACATATGGTTATGCTGCTCCAGAGCTAGCTTACACAATGGCAGTGACTGAGAAATGTGATGTGTTCAGCTTTGGTGTTTTGGCTTTGGAGGTTCTTACGGGGAAGCACCCTGGTGAGCTTGTTTCCTACATGCAAAGTTGTAGTGATCAACAGAAGGTAAATATGAAAGAGATTTTGGACCCTCGTGTCTTGGCTCCTTCCAAGGAGCATGTTTTGAAGCAAGTGGATTTGATTGCCAACATTGCTCTTTCATGTTTGAACACAAATCCTCAATCTCGACCAACTATGCGAACCATAGTTCAGTTGCTTCAAATGGGAACTGCAGAAATATAA 2871 0.4173 MQLFQNKNKHFLNITMSNSMCYVTTLLLLLAMCEATSGLTQADALLRWKQSLPHQPILDSWVINSTATTQTPCSWRGITCDSQGTVTTINLAYTGLAGTLHNLNFSVFPNLLRLDLKVNNLTGSIPQNIGVLSNLQFLDLSQNYLNGTLPLSIANLSQVFELDVSRNDISGVLDPALFPDGSHTPKTGLIGIRNLLFQDTLLGGTIPNEIGNIRNLTLLALDGNYFHGPIPSSLGNCTHLSILRMPENQLSGPIPPSIGKLTNLTDVRFFSNNLNGSVPQEFGNLSSLIVLHLAENNFVGELPPEVCKSGKLVNFSAAFNSFTGPIPRSLRDCPSLYRVRLEYNRLTGFADQDFGVYPNLTHMDFSHNRVKGNLTANWGGCQNLQHLSMAGNGVSGNIPSEIFQLEQLQELDLSSNQLSGEIPPMIGNSNLYKLNLCENKLSGMVPVEIGKLSNLGSLDLSMNMLLGPIPNQIGELSNLQNLNLSNNKFNGTIPYQIGNLADLQYFLDLSYNSLSGDIPSDLGRLSNLITLNISHNNLSGSIPHSLGELVSLSVINLSNNNLEGPVPNGGIFNSSYPLDLSNNKDLCGNIEGLQPCNVSLTKPDGGGSSKRNKAVILIVASLGGAFFISLVLVGIFFFIYKRKSRAPRQRNSFSRPNPFSIWFFNGRVVYRDIIEATKNFDSQYCIGEGALGKVYKAEMSGGEVFAVKKFKCDSENLDMERIKSFENEVEIMTETRHRNIVKLYGFCSQGMHTFLIYEYMEGGNLEEMLRDDKEALKLNWLERVDIIKSVASALSYMHHECASPLIHRDISSKNILLSFNLSAHVSDFGTARFLKPDSPIWTSFAGTYGYAAPELAYTMAVTEKCDVFSFGVLALEVLTGKHPGELVSYMQSCSDQQKVNMKEILDPRVLAPSKEHVLKQVDLIANIALSCLNTNPQSRPTMRTIVQLLQMGTAEI* 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00107 956 Pfam Leucine rich repeat 507 562 IPR001611 GO:0005515
Phac11g00107 956 Gene3D Phosphorylase Kinase; domain 1 647 759 - -
Phac11g00107 956 Gene3D Ribonuclease Inhibitor 187 316 IPR032675 -
Phac11g00107 956 SMART serkin_6 680 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac11g00107 956 SUPERFAMILY L domain-like 69 253 - -
Phac11g00107 956 SUPERFAMILY L domain-like 203 588 - -
Phac11g00107 956 PANTHER LEUCINE RICH REPEAT KINASE 2 234 951 - -
Phac11g00107 956 ProSiteProfiles Leucine-rich repeat profile. 407 429 IPR001611 GO:0005515
Phac11g00107 956 SMART LRR_typ_2 525 549 IPR003591 -
Phac11g00107 956 SMART LRR_typ_2 132 156 IPR003591 -
Phac11g00107 956 SMART LRR_typ_2 476 500 IPR003591 -
Phac11g00107 956 SMART LRR_typ_2 285 309 IPR003591 -
Phac11g00107 956 SMART LRR_typ_2 405 429 IPR003591 -
Phac11g00107 956 FunFam MDIS1-interacting receptor like kinase 2 760 955 - -
Phac11g00107 956 Gene3D Ribonuclease Inhibitor 36 120 IPR032675 -
Phac11g00107 956 Gene3D Ribonuclease Inhibitor 329 602 IPR032675 -
Phac11g00107 956 Gene3D Transferase(Phosphotransferase) domain 1 760 955 - -
Phac11g00107 956 FunFam Leucine-rich repeat receptor-like protein kinase TDR 282 598 - -
Phac11g00107 956 ProSitePatterns Tyrosine protein kinases specific active-site signature. 805 817 IPR008266 GO:0004672|GO:0006468
Phac11g00107 956 SUPERFAMILY Protein kinase-like (PK-like) 653 949 IPR011009 -
Phac11g00107 956 FunFam Predicted protein 185 273 - -
Phac11g00107 956 Pfam Leucine rich repeat N-terminal domain 40 81 IPR013210 -
Phac11g00107 956 Gene3D Ribonuclease Inhibitor 121 182 IPR032675 -
Phac11g00107 956 ProSiteProfiles Protein kinase domain profile. 680 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac11g00107 956 Pfam Protein kinase domain 685 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac11g00107 956 FunFam Nuclear pore complex protein NUP107 39 178 - -
Phac11g00107 956 PRINTS Leucine-rich repeat signature 135 148 - -
Phac11g00107 956 PRINTS Leucine-rich repeat signature 405 418 - -
Phac11g00107 956 FunFam Leucine-rich repeat receptor protein kinase MSP1 642 759 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00107 Phac-Chr11 728283 731742 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00107 35 853 Receptor kinase-like Gene Family AT4G08850 39.738 0.0 606
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phac11g00107 Pkinase 8.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00107 - - var:108339503 1569.29