Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00105 ATGAATAACAGTATGTGTTATGTCACTACGTTGCTGCTTTTGCTGGCTATGTGTGAAGCCACTTCAGGACTCACACAAGCTCATGCACTTCTTAGGTGGAAACAAAGTCTACCTCACCAACCAATTCTGGATTCCTGGGTGATCAACTCCACTGCAACAACTCAAACTCCATGTTCATGGCGAGGTATCACTTGTGATTCCCAAGGCACTGTCACTATAATCAACTTGGCTTATACTGGACTTGCAGGTACCCTTCACAATCTGAACTTTTCTGTTTTTCCAAACCTTCTTCGTCTTGACCTCAAAGTAAACAATCTCACTGGCTCCATACCACAAAACATTGGGGTGCTCTCAAACCTCCAGTTCCTTGACCTTTCCCAAAACTATCTCAATGGCACTCTGCCCCTTTCCATTGCCAATCTGAGTCAAGTTTTTGAGCTTGATGTTTCAAGAAATGATATATCAGGGGTATTAGACCCTGCCCTTTTTCCTGATGGATCTCACACCCCCAAAACTGGCCTCATTGGTATCAGGAACCTTCTCTTCCAAGACACCTTGCTTGGTGGAACAATCCCAAATGAAATAGGGAACATTAGAAACTTGACTCTGCTAGCTCTAGATGGAAACTACTTCCATGGTCCTATTCCCTCATCTCTAGGAAACTGCACACATTTAAGCATTCTAAGAATGCCTGAAAACCAACTCTCAGGTCCAATACCTCCAAGTATTGGTAAATTAACCAATCTAACCGATGTGCGCTTTTTCTCCAACAACTTAAATGGTAGTGTTCCCCAAGAATTTGGAAACTTGTCTTCCTTGATTGTGCTGCATCTTGCTGAGAACAACTTCGTTGGTGAATTACTACCAGAGGTGTGCAAAAGTGGGAAACTTGTAAATTTTAGTGCAGCCTTTAATAGTTTCACTGGCCCAATTCCAAGAAGCCTCAGAGACTGTCCTTCCTTGTACAGGGTTCGACTTGAATACAACAGGCTCACAGGTTTTGCTGATCAGGATTTTGGTGTGTATCCCAACCTCACTCACATGGACTTCAGCCATAACAGGGTGAAAGGTAACCTCACTGCAAATTGGGGTGGCTGCCAAAACCTGCAACATCTGAGCATGGCTGGGAATGGAGTAAGTGGCAACATTCCAAGTGAGATTTTTCAGTTGGAACAACTACAAGAGCTTGATCTATCCTCCAACCAACTATCAGGAGAGATTCCTCCAATGATAGGAAACTCCAACTTGTATAAATTAAATTTGTGTGAAAACAAACTCTCTGGCATGGTACCAGTAGAAATTGGAAAGCTTTCCAATTTGGGATCCTTAGACCTTTCTATGAACATGCTACTAGGTCCAATCCCCAATCAGATAGGGGAGCTCTCCAACTTGCAGAATTTAAATCTTAGCAACAACAAGTTTAATGGCACAATCCCCTACCAAATTGGAAACCTGGCAGATTTACAATATTTTTTGGATTTGAGTTACAATTCACTTTCAGGAGATATTCCCAGTGATCTTGGGAGGCTTTCAAATTTGATAACCTTGAATATCTCTCACAACAATCTGTCAGGTTCAATCCCTCACTCCCTTGGTGAACTGGTGAGTTTGTCAGTCATCAACCTCTCCAACAATAACTTGGAGGGTCCAGTTCCCAATGGTGGCATATTCAACTCTTCTTATCCCCTGGATTTGAGCAACAACAAAGATCTATGTGGAAATATTGAAGGTTTGCAACCCTGTAATGTCTCTCTCACTAAACCTGATGGTGGTGGATCAAGTAAAAGGAACAAGGCTGTGATCCTTATTGTGGCTTCTCTGGGAGGTGCTTTTTTTATTTCTTTGGTGTTAGTTGGGATTTTTTTCTTTATCTATAAGAGAAAATCAAGAGCTCCAAGGCAAAGAAACTCGTTCAGTAGACCGAATCCATTTTCAATTTGGTTCTTCAATGGGAGAGTTGTGTATAGAGACATAATTGAAGCTACCAAGAATTTTGACAGCCAATATTGCATTGGGGAAGGAGCACTGGGAAAAGTTTACAAAGCTGAGATGTCAGGAGGTGAAGTATTTGCTGTGAAAAAGTTCAAGTGTGATTCAGAAAACTTAGACATGGAGAGAATAAAATCCTTTGAGAATGAGGTAGAAATCATGACAGAAACACGCCACAGAAACATTGTGAAGCTTTATGGATTTTGCTCTCAAGGGATGCACACCTTTCTGATTTATGAGTACATGGAGGGTGGCAACTTAGAGGAGATGCTGAGAGATGACAAGGAAGCATTGAAACTGAATTGGCTCGAAAGGGTTGATATCATCAAGAGTGTAGCAAGTGCTTTGTCCTACATGCATCATGAATGTGCTTCACCTTTAATTCACAGAGACATATCAAGCAAGAACATTTTGCTGTCCTTCAATCTTTCAGCTCATGTCTCAGATTTTGGAACTGCAAGGTTTCTGAAGCCGGATTCTCCTATTTGGACATCATTTGCCGGCACATATGGTTATGCTGCTCCAGAGCTAGCTTACACAATGGCAGTGACTGAGAAATGTGATGTGTTCAGCTTTGGTGTTTTGGCTTTGGAGGTTCTTACGGGGAAGCACCCTGGTGAGCTTGTTTCCTACATGCAAAGTTGTAGTGATCAACAGAAGGTAAATATGAAAGAGATTTTGGACCCTCGTGTCTTGGCTCCTTCCAAGGAGCATGTTTTGAAGCAAGTGGATTTGATTGCCAACATTGCTCTTTCATGTTTGAACACAAATCCTCAATCTCGACCAACTATGCGAACCATAGTTCAGTTGCTTCAAATGGGAACTGCAGAAATATAA 2826 0.4183 MNNSMCYVTTLLLLLAMCEATSGLTQAHALLRWKQSLPHQPILDSWVINSTATTQTPCSWRGITCDSQGTVTIINLAYTGLAGTLHNLNFSVFPNLLRLDLKVNNLTGSIPQNIGVLSNLQFLDLSQNYLNGTLPLSIANLSQVFELDVSRNDISGVLDPALFPDGSHTPKTGLIGIRNLLFQDTLLGGTIPNEIGNIRNLTLLALDGNYFHGPIPSSLGNCTHLSILRMPENQLSGPIPPSIGKLTNLTDVRFFSNNLNGSVPQEFGNLSSLIVLHLAENNFVGELLPEVCKSGKLVNFSAAFNSFTGPIPRSLRDCPSLYRVRLEYNRLTGFADQDFGVYPNLTHMDFSHNRVKGNLTANWGGCQNLQHLSMAGNGVSGNIPSEIFQLEQLQELDLSSNQLSGEIPPMIGNSNLYKLNLCENKLSGMVPVEIGKLSNLGSLDLSMNMLLGPIPNQIGELSNLQNLNLSNNKFNGTIPYQIGNLADLQYFLDLSYNSLSGDIPSDLGRLSNLITLNISHNNLSGSIPHSLGELVSLSVINLSNNNLEGPVPNGGIFNSSYPLDLSNNKDLCGNIEGLQPCNVSLTKPDGGGSSKRNKAVILIVASLGGAFFISLVLVGIFFFIYKRKSRAPRQRNSFSRPNPFSIWFFNGRVVYRDIIEATKNFDSQYCIGEGALGKVYKAEMSGGEVFAVKKFKCDSENLDMERIKSFENEVEIMTETRHRNIVKLYGFCSQGMHTFLIYEYMEGGNLEEMLRDDKEALKLNWLERVDIIKSVASALSYMHHECASPLIHRDISSKNILLSFNLSAHVSDFGTARFLKPDSPIWTSFAGTYGYAAPELAYTMAVTEKCDVFSFGVLALEVLTGKHPGELVSYMQSCSDQQKVNMKEILDPRVLAPSKEHVLKQVDLIANIALSCLNTNPQSRPTMRTIVQLLQMGTAEI* 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00105 941 ProSiteProfiles Leucine-rich repeat profile. 392 414 IPR001611 GO:0005515
Phac11g00105 941 FunFam Nuclear pore complex protein NUP107 24 163 - -
Phac11g00105 941 Pfam Leucine rich repeat 492 547 IPR001611 GO:0005515
Phac11g00105 941 SUPERFAMILY Protein kinase-like (PK-like) 638 934 IPR011009 -
Phac11g00105 941 FunFam Predicted protein 170 258 - -
Phac11g00105 941 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 233 935 - -
Phac11g00105 941 SMART serkin_6 665 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac11g00105 941 Gene3D Phosphorylase Kinase; domain 1 632 744 - -
Phac11g00105 941 FunFam Leucine-rich repeat receptor protein kinase MSP1 627 744 - -
Phac11g00105 941 Gene3D Transferase(Phosphotransferase) domain 1 745 940 - -
Phac11g00105 941 SMART LRR_typ_2 461 485 IPR003591 -
Phac11g00105 941 SMART LRR_typ_2 510 534 IPR003591 -
Phac11g00105 941 SMART LRR_typ_2 390 414 IPR003591 -
Phac11g00105 941 SMART LRR_typ_2 270 294 IPR003591 -
Phac11g00105 941 SMART LRR_typ_2 117 141 IPR003591 -
Phac11g00105 941 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Phac11g00105 941 SUPERFAMILY L domain-like 414 576 - -
Phac11g00105 941 Gene3D Ribonuclease Inhibitor 168 253 IPR032675 -
Phac11g00105 941 Gene3D Ribonuclease Inhibitor 256 584 IPR032675 -
Phac11g00105 941 ProSiteProfiles Protein kinase domain profile. 665 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac11g00105 941 Pfam Protein kinase domain 670 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac11g00105 941 PRINTS Leucine-rich repeat signature 390 403 - -
Phac11g00105 941 PRINTS Leucine-rich repeat signature 120 133 - -
Phac11g00105 941 Gene3D Ribonuclease Inhibitor 24 167 IPR032675 -
Phac11g00105 941 SUPERFAMILY L domain-like 66 450 - -
Phac11g00105 941 FunFam MDIS1-interacting receptor like kinase 2 745 940 - -
Phac11g00105 941 ProSitePatterns Tyrosine protein kinases specific active-site signature. 790 802 IPR008266 GO:0004672|GO:0006468
Phac11g00105 941 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 271 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00105 Phac-Chr11 708970 712077 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00105 20 838 Receptor kinase-like Gene Family AT4G08850 39.629 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phac11g00105 Pkinase 8.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00105 - - var:108339503 1562.36