Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00091 ATGGACGCCCTCGATTCAACCCCAAATCTCCCTCCCCTCCATCCCTATGATCCTTCCTCGCTGAACCACGCGCCATCAGAGTATCAGAACTCGTCACAACACCAATCGGAGACCGCACAAAACGGTAACGGTACCGGTGATGGAAGACTGTCGGAGAACGGTCAGGGACCTTTGGATAACAACGGTTTGCATCCTCAGATTTCGAAGCCATTGCTCTCCGAAGGATTGACGCGGAGTGGCACCGACAGGGACCAATCCGGCGGCGAAGAGGAGACCACGAGCAAGCGCCGCCGCCGGAGCAGGTGGGATCCGCAACCGGAATCGAATGACCAGAGCGGCCAGAGTGGCGGGGAATTGGGGTCCGGGCCGAAGAAGAGGAAGTCTCGTTGGGCCGACGACGAGCCCAAGCCGGTGATTCAACTTCCTGATTTCATGGGCGGTATTGAATTCGATCCCGAGATTCAGGCTTTGAACAGTAGGCTTCTTGAGATTAGTCGAATGTTACAGTCAGGTTTACCCTTAGATGATCGCCCCGAAGGTGCTCGATCTCCTTCGCCCGAGCCGATATATGATAACATGGGCATTAGGATTAACACTAGGGAATACCGGGCGCGTGAGAGATTGCAAAAAGAGAGGCAGGAGATTATATCTCAGATTATAAAGAAGAACCCCGCGTTTAAGCCACCTGCAGATTATAGGCCGCCCAAGCTTCAGAAGAAGCTTTATATACCGATGAAAGAATACCCTGGTTACAATTTCATTGGGCTTATTATTGGTCCCAGAGGTAACACTCAGAAGCGGATGGAGAAAGAAACTGGTGCTAAAATTGTGATTCGAGGTAAAGGATCAGTGAAAGAGGGTAGGCTACAGCAGAAGAGGGATTTGAAGCCTGATCCATCGGAGAATGAAGATTTGCATGTTTTGGTAGAGGCTGAGACGCCGGAGTCGCTTGAGGCCGCTGCGGGTATGGTGGAGAAGCTCTTGCAGCCTGTGGACGAGGTGTTGAATGAGCACAAGAGGCAACAGCTTAGGGAACTTGCTGCATTGAATGGGACGATCAGGGATGAAGAGTACTGCAGGCTTTGTGGTGAACCTGGTCATCGCCAATATGCATGTCCTACCAGGACTTCGACTTTTAAGAGTGAAGTTGTCTGTAAGCATTGTGGGGATGGTGGTCATCCAAGCATAGATTGTCCGGTGAAGGGTGCTACTGGGAAGAAGATGGATGATGAGTATCAGAATTTCCTAGCAGAGTTGGGTGGTTCGGTTCCTGAATCTGCAACTAAGCAAACCAGTACCTTAGCGATTGGAGCAGGCACTTCTGGAAGCAATCCTCCTTGGGCCAACAATTCCGCTACGGCTGGTGGTTTGGCTCAAGCTGGCTTAGGGGCTGCTGCAGTTAAAAAGGAAATCGATGATACAAATTTGTACATTGGATATTTGCCGCCCAGTCTTGACGATGATGGCTTAATCCAATTATTTCAACAATTTGGTGAGATTGTTATGGCAAAAGTGATCAAAGATCGAATGTCGGGTTTAAGTAAAGGATACGGTTTTGTGAAGTATGCTGATATCACAATGGCAAACAATGCAATCTTGGCCATGAACGGTTATCGCCTCGAGGGTCGAACAATTGCAGTGAGAGTTGCTGGTAAGCCTCCTCAGCCTGTTGTGCCTCCTGGCCCACCAGCATCTGCTGTGCCCACTTATCCTGTTCCAAGCCAGCCACTCGGTGGTTATCCATCCCAACAGTATGCTGCTGGTGGCCCCCTTGGGACTGCTCCTCCTGGGAGTTACGGTGGTACTCCAGTGCCATGGGGACCCTCTGTTCCTCCTCCATATGCTCCTTATGCTCCTCCTCCTCCTGGGTCAACCATGTATCCACCTATGCAAGGTCAACCTATGCCTCCATATGGGGTTCAATATCCTCCTCCTGTGCAGACTGGCCCTCCTGGTGCCCCATCCCAGCCTGCAACTTCTAGTGAATTGCAGCAGAGTTACCCACCTGGAGTGCAGTCTGACAATAGTACCTCAACTCAGTCTGTAGCAGTAAATGTATATGGTAACTCAGTACCTTCAATGCCACCTGCAGCCCAACCTACATATCCTGCATCTTATGGATATCCACCTTACTATAACGCAGTTCCTCCTCCACCTCCCCCTCCCGCCCCCATTCCTGTTTCAACTTCAGACCAATCCCACAACATTGCTAATGTTCCTTGGGCCAATAGTTCTCTTGTTCCACCACATGCTTCGTCGGCAGACAAGACAACATATGGTACAGATCAATCCCTTAGCATTGGAAATGTGCCTAGGACCACAAATCCTCCAGTGCCTCCTCCTCCTTCATCAGCTGAGAAGACTTCATATGGTACTGATTCAGAGTATGAGAAATTCATGGCAGAGATGAAATGA 2415 0.5023 MDALDSTPNLPPLHPYDPSSLNHAPSEYQNSSQHQSETAQNGNGTGDGRLSENGQGPLDNNGLHPQISKPLLSEGLTRSGTDRDQSGGEEETTSKRRRRSRWDPQPESNDQSGQSGGELGSGPKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETPESLEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGSVPESATKQTSTLAIGAGTSGSNPPWANNSATAGGLAQAGLGAAAVKKEIDDTNLYIGYLPPSLDDDGLIQLFQQFGEIVMAKVIKDRMSGLSKGYGFVKYADITMANNAILAMNGYRLEGRTIAVRVAGKPPQPVVPPGPPASAVPTYPVPSQPLGGYPSQQYAAGGPLGTAPPGSYGGTPVPWGPSVPPPYAPYAPPPPGSTMYPPMQGQPMPPYGVQYPPPVQTGPPGAPSQPATSSELQQSYPPGVQSDNSTSTQSVAVNVYGNSVPSMPPAAQPTYPASYGYPPYYNAVPPPPPPPAPIPVSTSDQSHNIANVPWANSSLVPPHASSADKTTYGTDQSLSIGNVPRTTNPPVPPPPSSAEKTSYGTDSEYEKFMAEMK* 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00091 804 MobiDBLite consensus disorder prediction 282 303 - -
Phac11g00091 804 ProSiteProfiles Zinc finger CCHC-type profile. 385 399 IPR001878 GO:0003676|GO:0008270
Phac11g00091 804 Gene3D - 151 228 IPR047086 -
Phac11g00091 804 MobiDBLite consensus disorder prediction 741 794 - -
Phac11g00091 804 MobiDBLite consensus disorder prediction 625 652 - -
Phac11g00091 804 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 474 552 IPR000504 GO:0003723
Phac11g00091 804 ProSiteProfiles Type-1 KH domain profile. 252 324 - -
Phac11g00091 804 Gene3D - 449 556 IPR012677 -
Phac11g00091 804 ProSiteProfiles Zinc finger CCHC-type profile. 359 373 IPR001878 GO:0003676|GO:0008270
Phac11g00091 804 MobiDBLite consensus disorder prediction 653 678 - -
Phac11g00091 804 PANTHER RNA-BINDING PROTEIN RELATED 84 596 IPR045071 -
Phac11g00091 804 MobiDBLite consensus disorder prediction 577 600 - -
Phac11g00091 804 SMART kh_6 237 329 IPR004087 GO:0003676
Phac11g00091 804 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 237 363 IPR036612 GO:0003723
Phac11g00091 804 MobiDBLite consensus disorder prediction 625 678 - -
Phac11g00091 804 FunFam splicing factor-like protein 1 229 357 - -
Phac11g00091 804 MobiDBLite consensus disorder prediction 122 136 - -
Phac11g00091 804 SMART rrm1_1 475 548 IPR000504 GO:0003723
Phac11g00091 804 Gene3D K Homology domain, type 1 229 357 IPR036612 GO:0003723
Phac11g00091 804 Pfam KH domain 252 325 IPR004088 GO:0003723
Phac11g00091 804 MobiDBLite consensus disorder prediction 741 772 - -
Phac11g00091 804 SUPERFAMILY Retrovirus zinc finger-like domains 355 401 IPR036875 GO:0003676|GO:0008270
Phac11g00091 804 SUPERFAMILY RNA-binding domain, RBD 470 562 IPR035979 GO:0003676
Phac11g00091 804 CDD KH-I_BBP 236 329 - -
Phac11g00091 804 MobiDBLite consensus disorder prediction 1 140 - -
Phac11g00091 804 MobiDBLite consensus disorder prediction 83 105 - -
Phac11g00091 804 MobiDBLite consensus disorder prediction 22 62 - -
Phac11g00091 804 FunFam splicing factor-like protein 1 454 556 - -
Phac11g00091 804 Pfam Splicing factor 1 helix-hairpin domain 126 233 IPR032570 -
Phac11g00091 804 SMART c2hcfinal6 358 374 IPR001878 GO:0003676|GO:0008270
Phac11g00091 804 SMART c2hcfinal6 384 400 IPR001878 GO:0003676|GO:0008270
Phac11g00091 804 FunFam splicing factor 1 357 410 - -
Phac11g00091 804 Gene3D - 358 410 - -
Phac11g00091 804 MobiDBLite consensus disorder prediction 171 192 - -
Phac11g00091 804 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 476 545 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00091 Phac-Chr11 601216 606025 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00091 474 605 Eukaryotic Initiation Factors Gene Family AT3G16380 30.935 9.13e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00091 K13095 - gmx:100800982 1276.54