Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00077 ATGGCTCGCGGAAAGGTTCAGCTGAAGAGAATTGAGAACCCTGTGCACAGACAAGTCACCTTCTGTAAGCGCCGAGCTGGGCTTCTTAAGAAGGCTAAGGAGCTCTCTGTGCTGTGCGATGCTGAAATTGGTCTTTTCATTTTCTCCGCCCATGGAAAACTCACCGAATTAGCCACCAAAGGAAGCATGCAAGGGCTGATTGAGAGGTACATGAAGTTCACAAGAGGGACTCACCCTGAAGCACCACCCCAACCACTTCTTCTGGATGCAAAAGAGGAATCTAACGTGCTGAAACAAGAAATCCAAAAACTGCAAAGGAGTATCAGGACTTCGACCATAGATGAACTACAAGTGCTAGAGAAGAATTTGGAAACTTGGATATATCATATTCGCTCAATGAAGACGAACATCATGTTACAAGAAATTGAAGCATTGAAAGACAAGGAGGGAACACTTACAGCGGCAAATAAATATCTCCATGCTAAGATTGTGGAGAATTCTGCAATTCATAACTTGGTTCAATTTGCTACAGATGCTTCATACCCACTGATTATACAAGATGGGAGTTTTCAACTCTATTAA 582 0.4296 MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLTELATKGSMQGLIERYMKFTRGTHPEAPPQPLLLDAKEESNVLKQEIQKLQRSIRTSTIDELQVLEKNLETWIYHIRSMKTNIMLQEIEALKDKEGTLTAANKYLHAKIVENSAIHNLVQFATDASYPLIIQDGSFQLY* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00077 193 Coils Coil 87 107 - -
Phac11g00077 193 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac11g00077 193 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phac11g00077 193 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac11g00077 193 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 139 - -
Phac11g00077 193 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phac11g00077 193 Pfam K-box region 91 163 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac11g00077 193 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Phac11g00077 193 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Phac11g00077 193 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Phac11g00077 193 Gene3D - 15 77 IPR036879 GO:0003677|GO:0046983
Phac11g00077 193 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00077 Phac-Chr11 537560 544395 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00077 1 192 MADS-box Gene Family AT1G71692 55.450 6.72e-65 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phac11g00077 K-box 5.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00077 - - gmx:100783345 310.842