Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00057 ATGGTGGTCAACGAGAGACCATCCAAGAGGATGAAGAGGAGGGTCACGGCTGATCTCTACGATTTCCTCACTTTTCCGGCCATCGCCGACTCCCCCTCCGGCCAACCCTTCCGGACCTGTGTCCAACGCTTCCTCTCAGACCACGCGCGCATAACCTTTCCTCCCTCCTTATTTCCGTCCCTTATGACGTGGCAGATCTTGTTCCGTGTCGGAGACCTCGTCGACGGATCCGATCTCTCGCCGGCGGTCGTTACTCTTGACATTGTCGAGGAGGATGTTACCCGTTCTCGCACTTCTGTTTATTGTGACCAGTGCCGAGTCGTTGGGTGGAGTGGGCATCCGGTGTGTCGAAAGCGATACCATTTCATAATAAGGGCTGCGAGTAATGCGGTCGAACCATATCAAAGACCTTGTTCAAGATGTGGGAACCTGCTCCAATTATCTGAAACAAGGTGTAAATCGTGTAACTTCGCCATCACTGTGGATGACCTTGAGGACTGGGTGTATCTTCAGATTGAAGATAACACGCATCTTCTTCATGGTGTGGTCCATTCCAATGGTTATGGTCACCTGCTTACACTCAGTGGAAGAGAAGGTGGCTCGAAGCTTCTATCTGGATTTGATATCATGGATTTCTGGGATAGGCTGTGTACTTCAATTTCTGTGAGGAAGGTTAGCGTGATGGACTTGTCCAAGAAATTTGGGCTGGAATACCGTTTGCTTCATGCAATCACCAAAGGACATTCCTGGTATGGCAATTGGGCTTATGAGTTTGGAACTGGCAGCTATGCTCTTACCCAAGATGCGTACAAAAACGCGGTGAATACACTGTCGAGTATGCCCTTGTCGTCATTTTCATTCCACGGTCGGGGACCACGAAGCCGTCTGGAGTGTGTCATTTCTCTTTACCAGTCTTTGGCAGAAACAGAACTTCTGAACATTCAAGATCTGTTCTCCTTTTTGTTGGTATTGATTCGTGAATGTCGTAAGCCAATAGCCACGACAAGTTTTAAGCAGACCAGTAATCTGTTGTGTACGTGGACGGGAAATGATGTTGAAGAGGTACAACATGCTCTTGTCAAGGTGTTGCTTGCATCGGGTGCGTGTACTGAGTCCAAATGGGTGACAAGGCGTGCTCTCAAGGGTGCAGTATGCAGGGGTGTTTCATCTCCAGAGCTTCTTGACTACTGTCTTAAGCACTTGCCTGGGAAATTAGCTGCCAATGGGATGGTGGTTTGTTCACGATGTAATCCAATTTCCAGTGCAATCGAGTTCAGGTTGGGACCAAGGAGTAATGGATTAAGTACAGATTTAAGCTATCCTACAGAAGGGCAACTGATCTCTGACTTGAAATTTTTATTTGATTCGATAATACATCCTGACAAAATGATGTCCTACAGACCTAGGATTATGAGGAAAAGGGTTGCTGATTCCGCCAGGAAGCTCCTTGACTGTAAACAATTTATGAAGGATTACAAGCCATATGAAATGGCCATAGAACCGCCCTCTGTGATTAGGTTGTGGTGCCATGTGGAGCTTTCTGATCAGCCTAAGGATGATCCATGCCCACCGCCAGAGCTTATTGTGCTGCCTTTGAACGCCACCTTTGCTGAGCTCAAGAGCGAAGCCACTAGTGCTTTTCAAGAGGTGTATGCAATGTATAAGAGGTTTCAAGCTGAAGAACTCCTGGGATATGGGTCAATCAGTGATTCGCTCACCGTAAAGTTATTGCTTGGAACAAGTGGATCAGTCCGAATTCAAGGTAAATGCCCAGCCAAACATGGGCTAAGCAGATTCCGAATGGAGCGAGGAACTGAGGCGTGGAAGGTTGATTGTACCTGTGGGGCCAAGGATGATGATGGAGAGAAAATGTTAGCATGTGATACCTGTGGCGTTTGGCAGCATACCAGATGCGCTGGAATTGATAATTCTGATGGCATGCCTTCTAAGTTTGTTTGCATGAGATGTGTCAACTTGTACCGTGAGGAAACTAAAAATTCGCCAGCATCTGGTGAGGAACCTAACGCGACCTGTAAATTCAACTCATCTTGCAGAGACGAGGCAGTAGGAAGGGAATGTCCAACAGTTTCATGTAACATAACTGTGAATTTTGGTGTACGTTGA 2124 0.4713 MVVNERPSKRMKRRVTADLYDFLTFPAIADSPSGQPFRTCVQRFLSDHARITFPPSLFPSLMTWQILFRVGDLVDGSDLSPAVVTLDIVEEDVTRSRTSVYCDQCRVVGWSGHPVCRKRYHFIIRAASNAVEPYQRPCSRCGNLLQLSETRCKSCNFAITVDDLEDWVYLQIEDNTHLLHGVVHSNGYGHLLTLSGREGGSKLLSGFDIMDFWDRLCTSISVRKVSVMDLSKKFGLEYRLLHAITKGHSWYGNWAYEFGTGSYALTQDAYKNAVNTLSSMPLSSFSFHGRGPRSRLECVISLYQSLAETELLNIQDLFSFLLVLIRECRKPIATTSFKQTSNLLCTWTGNDVEEVQHALVKVLLASGACTESKWVTRRALKGAVCRGVSSPELLDYCLKHLPGKLAANGMVVCSRCNPISSAIEFRLGPRSNGLSTDLSYPTEGQLISDLKFLFDSIIHPDKMMSYRPRIMRKRVADSARKLLDCKQFMKDYKPYEMAIEPPSVIRLWCHVELSDQPKDDPCPPPELIVLPLNATFAELKSEATSAFQEVYAMYKRFQAEELLGYGSISDSLTVKLLLGTSGSVRIQGKCPAKHGLSRFRMERGTEAWKVDCTCGAKDDDGEKMLACDTCGVWQHTRCAGIDNSDGMPSKFVCMRCVNLYREETKNSPASGEEPNATCKFNSSCRDEAVGRECPTVSCNITVNFGVR* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00057 707 SUPERFAMILY FYVE/PHD zinc finger 601 658 IPR011011 -
Phac11g00057 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 597 661 IPR013083 -
Phac11g00057 707 ProSitePatterns Zinc finger PHD-type signature. 612 656 IPR019786 -
Phac11g00057 707 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 666 - -
Phac11g00057 707 Pfam PHD-finger 612 658 IPR019787 -
Phac11g00057 707 CDD PHD_MMD1_like 611 656 - -
Phac11g00057 707 SMART PHD_3 611 657 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00057 Phac-Chr11 410882 416978 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00057 80 656 PHD Transcription Factor Family AT5G22260 28.201 1.97e-85 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phac11g00057 PHD 2.2e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00057 K26271 - gmx:100780558 1290.4