Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00056 ATGGGTTCCTCTAATGGTGGTGTGCCGCCGGGATTTAGGTTTCATCCGACGGACGAAGAGCTTCTTCATTACTACTTGAAGAAGAAGGTCTCCTTTCAGAAGTTTGACATGGATGTTATCAGAGAGGTCGATTTGAACAAGATGGAACCTTGGGACTTGCAAGAAAGATGTAGAATTGGATCAACTCCACAAAACGAGTGGTATTTCTTCAGTCACAAGGATAGAAAGTACCCTACAGGTTCAAGGACTAATAGAGCAACGAATGCAGGGTTTTGGAAAGCAACAGGAAGAGACAAATGCATTAGGAACAGCTACAAGAAGATTGGAATGAGAAAAACCCTTGTGTTTTACAAAGGAAGAGCTCCTCATGGACAGAAGACTGATTGGATCATGCATGAGTACCGTCTAGAAGATGCCAATGACCCTCAAGGAACTGCCAATGAAGATGGGTGGGTGGTGTGCAGAGTGTTCAAGAAGAAGAATTTATTCAAGATTGGGAATGAAGGTGGCATTACACATAATCCAGATCAACAAATGAACAATTCCTCAAGCACTAATGGACGCTCCTTCATGCATAGAGAAAACCATTACCTGCTACACCAACAGCAGAATCCCAGGGAGCTTGATAAGCCTGAGCTCGGGCTCCATTACCCACACTTGCAAAATCCCCAATACTCACTCTTTCAATCCCAAAGTCTTGTTCAAACCCAAAAACCTATGGTTTATGACTATTCATATGCTTCATCTCTACCTTCAGACACTCCTATAATGGCAAAGCAACTGATGACAAACCCTAGGGAGTGCGAGAGCGGCAGCGAGGGACTGAGGTATCAAGTTTCGGAGTCTGGAATGGAAGTTGGATCGTGTGAGCCAAACCAAGAAATGGGTGGCGGAAGAGGTGAAGGGATAAACGAATGGGGTGTTCTTGATCGGTTAGTTACTTCCCATCTCGGAAACGAAGAGTCAAACAAAGGGGTGAGATTTGAGGAGGCGAATCCTCATTCTGTGCATCAGATCAACCAACTTTCGTTACGGGGAGAGATGGATTTCTGGGCCTATGGGCCCAAACAATGA 1074 0.4488 MGSSNGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMDVIREVDLNKMEPWDLQERCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLEDANDPQGTANEDGWVVCRVFKKKNLFKIGNEGGITHNPDQQMNNSSSTNGRSFMHRENHYLLHQQQNPRELDKPELGLHYPHLQNPQYSLFQSQSLVQTQKPMVYDYSYASSLPSDTPIMAKQLMTNPRECESGSEGLRYQVSESGMEVGSCEPNQEMGGGRGEGINEWGVLDRLVTSHLGNEESNKGVRFEEANPHSVHQINQLSLRGEMDFWAYGPKQ* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00056 357 SUPERFAMILY NAC domain 7 159 IPR036093 GO:0003677|GO:0006355
Phac11g00056 357 Gene3D NAC domain 17 164 IPR036093 GO:0003677|GO:0006355
Phac11g00056 357 Pfam No apical meristem (NAM) protein 9 136 IPR003441 GO:0003677|GO:0006355
Phac11g00056 357 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 221 - -
Phac11g00056 357 ProSiteProfiles NAC domain profile. 8 159 IPR003441 GO:0003677|GO:0006355
Phac11g00056 357 FunFam NAC domain-containing protein 17 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00056 Phac-Chr11 401900 404044 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00056 1 350 NAC Transcription Factor Family AT1G33280 55.742 2.32e-124 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phac11g00056 NAM 2.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00056 - - gmx:100804181 676.781