Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00049 ATGACTCCAGTTAATTTGGCAGGCCAGTTTGGTGACACCACATACACTAAGGTCTTTGTTGGAGGCTTGGCCTGGGAGACTCAAAAGGAGACCATGAAGAAGTATTTTGAGCAATTTGGTGAGATCTTGGAGGCTGTTGTCATCACTGACAAAGCCACTGGAAGATCTAAAGGCTATGGATTTGTTACATTTCGCGAACCAGAAGCTGCCATGAGAGCCTGTGTAGATGCTGCCCCTGTAATCGATGGTAGGAGAGCTAACTGCAACCTTGCTTCTTTGGGAGTCCAGAGATCTAAGCCTTCAACCCCAAAGCATGGAGGAGGAGGAGGGAGGAACTTGAGAGTAATGGGTTCTTTTCAGACAGGATTTGGAGGAGGAGTGGGATCAGCTTTTCCTTCAGCAGCAACCTTCCCTCATTATGCCATCCAGCAAGGGATACCTTATAATGTTTATGGGTACTCTCCTTACTCGCCGGATTACACTTACCCTACGAGCTACTATGGCGTGTATGGAGGAGCAACAGCTCAGTACCCAGTTTATGGAAGCGGGCCAGGAGGGATGATGACGGGTGCTGCAGCTTTCTATCCTTATCTGCAGTACGGAGGAGAAGGGAGTGGCGGCGGCGGCACAAGCGGTGGCTATAGTTCCGGGCAGGGTTACGGCGTGAACTATGCCCCTCACCTCTTTCAGTATTCTCCGATTGCTTCCACTGCAGCAGGTGCCTATGCCCAGCACTATGGAACGCCCATGTCTCTTGCTCCTTCCCCTGCCTTGCAATCAGTGTGTTTCGCTGTGCCGCAGGCGTGA 807 0.513 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGGRNLRVMGSFQTGFGGGVGSAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYGVYGGATAQYPVYGSGPGGMMTGAAAFYPYLQYGGEGSGGGGTSGGYSSGQGYGVNYAPHLFQYSPIASTAAGAYAQHYGTPMSLAPSPALQSVCFAVPQA* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00049 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Phac11g00049 268 PANTHER BOULE-RELATED 6 240 - -
Phac11g00049 268 SMART rrm1_1 17 89 IPR000504 GO:0003723
Phac11g00049 268 Gene3D - 7 113 IPR012677 -
Phac11g00049 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Phac11g00049 268 SUPERFAMILY RNA-binding domain, RBD 12 115 IPR035979 GO:0003676
Phac11g00049 268 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 10 97 - -
Phac11g00049 268 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00049 Phac-Chr11 368805 374512 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00049 12 196 C2H2 Transcription Factor Family AT2G19380 30.918 4.83e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00049 - - gmx:100779046 436.032