Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00048 ATGACTCCAGTTAATTTGGCAGGCCAGTTTGGTGACACCACATACACTAAGGTCTTTGTTGGAGGCTTGGCCTGGGAGACTCAAAAGGAGACCATGAAGAAGTATTTTGAGCAATTTGGTGAGATCTTGGAGGCTGTTGTCATCACTGACAAAGCCACTGGAAGATCTAAAGGCTATGGATTTGTTACATTTCGCGAACCAGAAGCTGCCATGAGAGCCTGTGTAGATGCTGCCCCTGTAATCGATGGTAGGAGAGCTAACTGCAACCTTGCTTCTTTGGGAGTCCAGAGATCTAAGCCTTCAACCCCAAAGCATGGAGGAGGAGGAGGGAGGAACTTGAGAGTAATGGGTTCTTTTCAGACAGGATTTGGAGGAGGAGTGGGATCAGCTTTTCCTTCAGCAGCAACCTTCCCTCATTATGCCATCCAGCAAGGGATACCTTATAATGTTTATGGGTACTCTCCTTACTCGCCGGATTACACTTACCCTACGAGCTACTATGGCGTGTATGGAGGAGCAACAGCTCAGTACCCAGTTTATGGAAGCGGGCCAGGAGGGATGATGACGGGTGCTGCAGCTTTCTATCCTTATCTGCAGTACGGAGGAGAAGGGAGTGGCGGCGGCGGCACAAGCGGTGGCTATAGTTCCGGGCAGGGTTACGGCGTGAACTATGCCCCTCACCTCTTTCAGTATTCTCCGATTGCTTCCACTGCAGCAGGTGCCTATGCCCAGCACTATGGAACGCCCATGTCTCTTGCTCCTTCCCCTGCCTTGCAATCAGGCGTGACCATGTCCCTTCAAGCTCCAATTCCTCATCGCTAG 822 0.5109 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGGRNLRVMGSFQTGFGGGVGSAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYGVYGGATAQYPVYGSGPGGMMTGAAAFYPYLQYGGEGSGGGGTSGGYSSGQGYGVNYAPHLFQYSPIASTAAGAYAQHYGTPMSLAPSPALQSGVTMSLQAPIPHR* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00048 273 SUPERFAMILY RNA-binding domain, RBD 12 115 IPR035979 GO:0003676
Phac11g00048 273 SMART rrm1_1 17 89 IPR000504 GO:0003723
Phac11g00048 273 Gene3D - 7 113 IPR012677 -
Phac11g00048 273 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 10 97 - -
Phac11g00048 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Phac11g00048 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Phac11g00048 273 PANTHER BOULE-RELATED 6 249 - -
Phac11g00048 273 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00048 Phac-Chr11 368577 374512 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00048 12 92 C2H2 Transcription Factor Family AT2G19380 43.210 5.76e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00048 - - aip:107629746 432.95