Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00034 ATGGCCCAGCAGTCATCTAGGCTCCAGCGTTTGCTTACTCTCCTGGACACTGGGTCAACCCAAGCTACAAGGTTGACCGCTGCTCGTCAGATAGGGGACATTGCAAAATCACACCCTCAAGACTTGACCAGTCTTCTCAAGAAGGTTTCTCAATATCTCCGCAGTAAAAATTGGGATACACGAGTTGCAGCTGCTCATGCAATTGGATCAATCGCCGAGAATGTTAAGCACATAAGTTTGACTGAACTTTTTGCTTCTGTTATATCACAAATGAGTGAGAATGGGATATCTTGTAGCATTGAGGATCTTTGTGCATGGCCGTATTTACAATCAAAACTTACAGGAAGCGCATTTAGAAGCTTTGATATGAACAAGGTGCTTGAATTTGGTGCCTTATTAGCATCAGGGGGTCAGGAATATGATATTGGAAATGATAATATAAAGAACCCGAAGGAGCGATTGGTTCGACAGAAGCAAAGTCTTCGCCGTCGTTTAGGTTTGGATGTCTGTGAACAATTTATGGATATCAGTGATGTCATAAGAGACGAAGATCTTATGGTGTCGAAATCAGACTCACATCTGAATGGGATTGATGGTAGAGTTTTTACTTCTTGTTCTGCTCATAACATCCAGAAAATGGTGGTAAACATGGTTCCTAGTGTCAAATCAAAGTGGCCAAGCGCAAGAGAATTGAATCTTTTAAAGCGTAAAGCGAAAATAAACTCAAAGGACCAAACAAAAACCTGGTGTGAAGATGGAGGTACAGAGGCATCAGGTGCTCAAAGTTTGACTTCAAAAGGCACATGTCCTGATTCACTGAATTACAGTAAGGTATTCATGGATGTTAATCACGACGATGACGGCTTCGAGCATGATGGGGATGGGCAATGGCCTTTCCACACTTTTGTTGAGCAACTTATTATAGATATGTTTGATTCTGTTTGGGAGATACGACATGGTAGCGTAATGGCACTGAGAGAGATTTTAGCACATCAAGGTTCTTCTGCTGGAGTATTTAAACCTGACTCACACATGGGTGGGACCCTGTTTATTGAATTAGAAGACAAAAGTATGCCAAGCACATTGAAGAGAGAGAGGGAAATTGATTTAAATATGCACGTTTCAGCTGATGAGTTTGATTCAAACCTGAAGAGGCCAAAACTTGAAGATGTATCATCATCAACCTTTATGGATAGTGTGATGACTTGCAACAATGAAGGTGATATTAAAATCAGCATTACTTCTGAAACCCATGGATGCAATTTAACATTGGATTATGGGAATGGGCAATTTAATGGTAATTCCAATGACATGGATCTGGAGTCTCAACCTGATGGCTCACATGATGCATGCAAAGAGTCTGCTAGTATAGCAGAACAGAAGGTTCATTTTGATGACAATAAGATGCCCCCTGGAAATCTTATTGCGCTGAGAAATCTTCCTCAGAACTGCGAGCTGATGAACTCTGTTAAAGTGGCTAGAAGTTCCTGGCTTCAAAACTGTGAATTTCTTCAAGATTGTGTGATACGCTTTTTGTGCGTGTTGTCACTAGATCGCTTTGGAGATTATGTATCTGATCAGGTTGTTGCTCCAGTGCGTGAAACCTGTGCACAGGCTTTAGGTGCTGCATTTAAGTATATGCATCCTGCACTAGTAAATGAAACATTGAACATATTGTTGGGAATGCAGTGTAGGCCAGAATGGGAGATTCGTCATGGCAGTCTTCTTGGTATAAAATATTTGGTTGCTGTACGGCAGGAGATGCTTTCTGATTTGCTTGGACGAGTTCTTCCTGCTTGTAAATCTGGGTTGGAGGACCCAGATGATGATGTCCGGGCAGTTGCTGCTGATGCTTTAATACCTGCTGCATCTGCAATTGTTTCCTTGCAGGGTCAAACATTGCATTCCATTGTGATGCTTTTATGGGATATATTGCTTGACTTGGATGATTTAAGTCCGTCCACCAGCAGTGTAATGAATCTGCTGGCAGAAATCTATTCTCAAGAAGAAATGGCGCCAAATATGTATGAAGTTTTTAGATTGGGAGACAAGGAAATGGAAAATGGAGGAGGTGGTTGTGGTGATGACGATGGAGAAGAAAATCCTTATGTGCTTTCAACATTGGCACAACGTTTGTGGCCCTTTATGAGGCACAGTATCACATCTGTTCGTTATTCTGCAATACGGACTTTGGAGAGGTTACTTGAAGCTGGATATAAAAGAAGCATGTCTGAGTTGTCTGGTGCTTCATTCTGGCCCTCTTCTATATTTGGAGATACCCTTAGAATCGTATTCCAGAATCTGCTATTAGAAACAAATGAGGATATTTTGCAATGTTCTGAGAGAGTTTGGAGTCTCCTTGTTCAGTGTTCTATGGAGGACTTGGAGATGGCTGCAAGTTCTTATGGGGCTTCTTGGATAGAACTTGCATCTACACCATTTGGATCAGCATTAGATGCATCAAAGATGTACTGGCCTGTTGCCTTTCCACGAAAAAGTCAAATTAGAGCAGCTGCTAAAATGAGAGCTGCAAAAATTGAAAATGAATATGGTGTGGAATTTAGTCTTGATTCTATTAAAGGAACTATTCCACACGATAGAAATGGAGATGTTCCCATGAATTCTGTCAAGATGGTCGTTGGTGCTGATGTGGACACGTCTGTTACTCATACCCGAGTAGTTACAGCAACTGCTTTGGGATATTTTGCTTCTAAGCTGCCAGCGAGTTCTTTAAAATATGTGATTGATCCACTGTGGAGCTCCCTAACCTCTTTATCTGGTGTCCAACGCCAGGTTGCATCTATGGTACTTATTTCTTGGTTCAAGGAGATTAAGATCAGGAATTTGTCCAAAAACCTTGATGGTATCCCTGGTGCCCTCAAAGGTTGGTTGCTGGACTTATTAGCATGTTCTGACCCAGCATTCCCGACAAAAGATTCACTTCTTCCTTATGCTGAGCTTTCCAGAACTTATGCAAAGATGCGCAGTGAGGCTGGTCAATTACTAAATGTAGTCAAGTCTTCTGGTATGTTTGATGAGTTATTGACAGCAACACAAATTGAGTTGGATCGCTTGAGTGTGGATGATGCCATTGGTTTTGCTTCAAAAATTCCAGCTTTGTGTAATGATAGTTCTGCAAATGAATCCTTGGCAAAGAACATCATGGATGATATTGAGTCCTCCAAACAAAGACTCTTGACAACTTCTGGATATTTAAAATGTGTTCAGAGCAACTTGCATGTTACAGTCACATCTGCAGTTGCAGCTGCAGTTGTCTGGATGTCTGAATTTCCTACACGACTTACGCCAATCATTTTGCCTTTGATGGCTTCAATCAGACGAGAGCAGGAGGAAATACTCCAAATGAAGTCTGCTGAGGCCCTTGCTGAGCTAATGTATCACTGTGTTGCACGTAAACCTTGCCCCAATGATAAATTAATAAAAAATATATGTAGTTTAACTTGCATGGATCCCTCTGAGACCCCTCAAGCCAAATCCCTTTGTACCATTGAGAGTATCGATGACCAAGGTCTTCTGTCTTTTAGAACTCCTGTGAGCAAACAGAAGTCAAAGGTCCATGTGCTGGCTGGTGAAGATCGTTCAAAGGTGGAGGGATTTTTAAGTAGACGAGGATCTGAGCTATCATTGAGGCTTCTATGTGAAAAGTTTGGTGCGTCATTATTTGACAAGCTTCCTAAGCTGTGGGATTGCCTTACTGAAGTTCTTAAACCTGTACCTGTCATCGAGGAAAAGCAAGCTAATGTGTCTATTGAGTCTGTTAGTGATCCTCAAACCTTGATTAACAATATCCAGGTGGTGCGCTCTGTTGCTCCTGTGTTAATCAAGGAGTTGAAGCCAAAACTGTTGACACTTCTTCCATGCATCTTCAAATGTGTTCAGCATTCTCATGTTGCTGTTAGATTAGCTGCTTCGCGCTGCATCACTTCCCTGGCACAGTCAATGACTGTGAAAGTTATGGGAGCTGTGATTGAAAAGGCTATCCCTATGTTGGAAGATTCGTCATCTGTTTATGCTCGACAAGGAGCAGGCATGTTGATTAGTTTTCTAGTTCAGGGGCTGGGTGTAGAGTTGGTACCTTATGCTCCTCTGTTGGTGGTTCCCCTTCTAAGGTGTATGAGTGATTGTGATCAATCTGTCAGACAGAGCGTGACTCATAGTTTTGCTGCTCTTGTTCCTTTACTTCCTTTGGCTCGGGGCCTTCCTCAACCTATTGGACTAGGGGAAGGTGTATCCAGAAATGCAGAAGACTTGCAGTTTTTAGAGCAACTGCTTGACAACTCTCATATTGAAGATTACAACTTGTGCACTGAATTGAAAGTAACATTGAGGAGGTATCAGCAGGAAGGCATAAATTGGTTAGCTTTTTTGAAACGTTTCAAGCTTCATGGAATTTTATGTGATGACATGGGACTTGGAAAGACACTTCAAGCATCAGCAATTGTGGCCTCTGATATAGCTGAGCATCGGACTACAATTGGGAATGAGGATCTTCCGGCATCTTTAATTATCTGCCCATCAACTCTAGTTGGGCACTGGGCCTTTGAGATAGAGAAGTATATTGATGTTTCTGTTATATCTAGTCTTCAGTATGTTGGTTCTGCTCAGGAAAGAATGCTTCTTCGAGATCATTTTTGTAAGCATAATGTCATTATAACATCATATGATGTTGTGCGTAAAGATGTTGATTTTCTGGGACAGCTGCTGTGGAATTACTGCATTTTAGATGAAGGGCACATAATAAAAAATGCCAAGTCTAAAGTTACACTTGCTGTAAAACAGTTGAAAGCCCAGCACCGCTTGATATTGAGTGGGACACCTATACAGAATAATATAATGGACTTGTGGTCCCTCTTTGATTTTCTGATGCCAGGCTTTCTTGGAACCGACAGACAGTTCCAAGCAGCATATGGAAAACCACTTTTAGCTGCAAGAGATCCAAAATGCTCTGCTAAGGATGCTGAAGCAGGAGTACTTGCTATGGAGGCATTGCATAAGCAGGTGATGCCTTTCCTCCTTCGTAGAACAAAGGATGAAGTCTTGTCTGATCTGCCAGAGAAAATAATCCAAGACAGATACTGTGATTTGAGCCCTGTACAATATAAACTTTACGAACAGTTTTCTGGTTCTCGTGTAAAACAAGAAATGTCATCTATTGTAACAACAACGAATGAGTCTGCTGCACCAGAAGGAAGTGGCACTTCTACTAAAGCGTCTTCACATGTTTTCCAGGCACTCCAATATTTGCTAAAACTCTGTAGTCATCCATTGCTTGTCACTGGTGAGAAGATTCCAGATTCACTCTCTTCCATCCTCTTAGAACTGTTTCCTGCTGGCTCTGATGTTGTTTCAGAACTTCACAAACTCCATCACTCCCCAAAATTAGTTGCTCTTCATGAGATTCTAGAAGAATGTGGAATTGGAGTTGATAATTCAGGTTCTGAGGGTACAGTTAACGTTGGGCAGCATAGGGTCTTGATATTCGCTCAGCATAAGGCTTTCCTGGATATAATTGAAAGAGACTTGTTTCAGACACACATGAAAAGTGTCACATATTTGCGGTTGGATGGGTCAGTTGCATCAGAAAAGCGTTTTGAAATTGTCAAAGCTTTCAATTCAGACCCTACCATTGATGTCTTACTGCTTACAACACATGTTGGTGGGCTTGGTTTGAACCTGACATCTGCAGATACCCTTGTCTTTGTGGAGCATGACTGGAATCCAATGCGAGACCATCAGGCTATGGATAGAGCACACAGGTTAGGTCAGAAAAAAGTAGTTAATGTCCATCGACTAATAATGCGTGGTACTTTGGAAGAGAAAGTTATGAGTCTACAAAGATTCAAAGTGTCCGTGGCTAATGCTGTCATTAATGCTGAAAATGCTAGTATGAAAACAATGAATACAGATCAGTTGCTTGACTTATTTGCATCAGCAGAAACCTCCAAAAAGGGTGTTAATGCTGTGAAGAGTTCGGAGAACAATTCTGATGGAGACGCCAAATTAGTAGGCAGTGGGAAGAGATTGAAATCGATACTTGGCGGATTGGAGGAACTATGGGACCAATCACAGTATACAGAGGAGTACAATCTGAGTCAATTTTTAGCGAGGCTTAATGGCTAA 6141 0.4161 MAQQSSRLQRLLTLLDTGSTQATRLTAARQIGDIAKSHPQDLTSLLKKVSQYLRSKNWDTRVAAAHAIGSIAENVKHISLTELFASVISQMSENGISCSIEDLCAWPYLQSKLTGSAFRSFDMNKVLEFGALLASGGQEYDIGNDNIKNPKERLVRQKQSLRRRLGLDVCEQFMDISDVIRDEDLMVSKSDSHLNGIDGRVFTSCSAHNIQKMVVNMVPSVKSKWPSARELNLLKRKAKINSKDQTKTWCEDGGTEASGAQSLTSKGTCPDSLNYSKVFMDVNHDDDGFEHDGDGQWPFHTFVEQLIIDMFDSVWEIRHGSVMALREILAHQGSSAGVFKPDSHMGGTLFIELEDKSMPSTLKREREIDLNMHVSADEFDSNLKRPKLEDVSSSTFMDSVMTCNNEGDIKISITSETHGCNLTLDYGNGQFNGNSNDMDLESQPDGSHDACKESASIAEQKVHFDDNKMPPGNLIALRNLPQNCELMNSVKVARSSWLQNCEFLQDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPALVNETLNILLGMQCRPEWEIRHGSLLGIKYLVAVRQEMLSDLLGRVLPACKSGLEDPDDDVRAVAADALIPAASAIVSLQGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEEMAPNMYEVFRLGDKEMENGGGGCGDDDGEENPYVLSTLAQRLWPFMRHSITSVRYSAIRTLERLLEAGYKRSMSELSGASFWPSSIFGDTLRIVFQNLLLETNEDILQCSERVWSLLVQCSMEDLEMAASSYGASWIELASTPFGSALDASKMYWPVAFPRKSQIRAAAKMRAAKIENEYGVEFSLDSIKGTIPHDRNGDVPMNSVKMVVGADVDTSVTHTRVVTATALGYFASKLPASSLKYVIDPLWSSLTSLSGVQRQVASMVLISWFKEIKIRNLSKNLDGIPGALKGWLLDLLACSDPAFPTKDSLLPYAELSRTYAKMRSEAGQLLNVVKSSGMFDELLTATQIELDRLSVDDAIGFASKIPALCNDSSANESLAKNIMDDIESSKQRLLTTSGYLKCVQSNLHVTVTSAVAAAVVWMSEFPTRLTPIILPLMASIRREQEEILQMKSAEALAELMYHCVARKPCPNDKLIKNICSLTCMDPSETPQAKSLCTIESIDDQGLLSFRTPVSKQKSKVHVLAGEDRSKVEGFLSRRGSELSLRLLCEKFGASLFDKLPKLWDCLTEVLKPVPVIEEKQANVSIESVSDPQTLINNIQVVRSVAPVLIKELKPKLLTLLPCIFKCVQHSHVAVRLAASRCITSLAQSMTVKVMGAVIEKAIPMLEDSSSVYARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFAALVPLLPLARGLPQPIGLGEGVSRNAEDLQFLEQLLDNSHIEDYNLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAEHRTTIGNEDLPASLIICPSTLVGHWAFEIEKYIDVSVISSLQYVGSAQERMLLRDHFCKHNVIITSYDVVRKDVDFLGQLLWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTDRQFQAAYGKPLLAARDPKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSPVQYKLYEQFSGSRVKQEMSSIVTTTNESAAPEGSGTSTKASSHVFQALQYLLKLCSHPLLVTGEKIPDSLSSILLELFPAGSDVVSELHKLHHSPKLVALHEILEECGIGVDNSGSEGTVNVGQHRVLIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVASEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASMKTMNTDQLLDLFASAETSKKGVNAVKSSENNSDGDAKLVGSGKRLKSILGGLEELWDQSQYTEEYNLSQFLARLNG* 2047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00034 2046 FunFam TATA-binding protein-associated factor BTAF1 508 688 - -
Phac11g00034 2046 CDD SF2_C_SNF 1797 1939 - -
Phac11g00034 2046 SMART ultradead3 1445 1639 IPR014001 -
Phac11g00034 2046 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1434 1681 IPR027417 -
Phac11g00034 2046 FunFam TATA-binding protein-associated factor 172 1691 2009 - -
Phac11g00034 2046 FunFam TATA-binding protein-associated factor BTAF1 1 96 - -
Phac11g00034 2046 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 4 2045 IPR044972 GO:0003677|GO:0016887|GO:0017025
Phac11g00034 2046 FunFam TATA-binding protein-associated factor BTAF1 1201 1407 - -
Phac11g00034 2046 SUPERFAMILY ARM repeat 6 1488 IPR016024 -
Phac11g00034 2046 Pfam SNF2-related domain 1467 1764 IPR000330 GO:0005524|GO:0140658
Phac11g00034 2046 FunFam B-TFIID TATA-box-binding protein-associated factor 1 1419 1680 - -
Phac11g00034 2046 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1818 1974 IPR001650 -
Phac11g00034 2046 Gene3D - 501 675 IPR011989 -
Phac11g00034 2046 Gene3D - 1201 1407 IPR011989 -
Phac11g00034 2046 Pfam Helicase conserved C-terminal domain 1826 1928 IPR001650 -
Phac11g00034 2046 Gene3D - 1421 1680 IPR038718 -
Phac11g00034 2046 SMART helicmild6 1842 1928 IPR001650 -
Phac11g00034 2046 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1461 1631 IPR014001 -
Phac11g00034 2046 Gene3D - 4 93 IPR011989 -
Phac11g00034 2046 Gene3D - 1691 2009 IPR027417 -
Phac11g00034 2046 Pfam Domain of unknown function (DUF3535) 783 1237 IPR022707 -
Phac11g00034 2046 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1682 1984 IPR027417 -
Phac11g00034 2046 CDD DEXHc_Mot1 1449 1681 IPR044078 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00034 Phac-Chr11 321209 341489 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00034 1444 1983 RAD5 or RAD16-like Gene Family AT1G02670 26.034 3.90e-43 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac11g00034 DUF3535 2.8e-103 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00034 K15192 - gmx:100777977 3630.49