Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00027 ATGAGTATGGAGCTTCCCTGTGACAGTGAGGGCGTCTGCATGCGGTGCAAGGCCGTGCCGGGAGAGGAAGAGAGGCTGCTATGCATCACCTGCAACACTCCGTGGCACCTCTCATGCCTCTCCACTCCTCCCTCCACTCTCGCAGCCACCACTCACTGGTCCTGTCCCGACTGCTCCAATCTCGATCCTCATCCACCCCTTCCCGCTCCCCAACGCAATGACCTCGTCGCCGCAATGCTAGCCATCGAAAACGATGACTCTCTTACGCAAACTCAGAAAGCCAGAAAACGCCAACAACTCATTGCTGGAAAAGCTCCGGCACAAGACGAAGACGAAGAAGAAGAAAAAGAAGAGAATCAGAGTAAACCACCATCTGTTTGGGAAATGCTCTCCAGAACCATCCAATGCTCCATCTGCCTCAACTTACCGGAGAGGCCCGTCACGACTCCTTGTGGTCACAGTTTCTGTCTGAAGTGTTTTGAGAAATGGGTTCGGCAAGGGAAGAAGAACTGTGCCCAGTGCCGCCAGGTTATACCGGCGAAGTTTTCAAGCCAGCCCCGTATCAATTCTGCCTTGGTGTTTGCAATTCGCATGGCCAGGACCAATTCTAACCCTAATGCTAGTGCCGGAGGAGATAGGACTCTCAACCATTACCGGCACAATCAAGACAGACCCGATGAGCCGTTTACTACGGAACGTGCCCAGAGGGCTGGCCGTGCCAATGCGGCCAGCGGAAAAATATTTGTGACGGTGCCTACGGATCATTTTGGTCCAATCACTGCAGAGCATGACCCTGTGAGGAATCAGGGTCTGCTGGTGGGTGAAAGTTGGAGAGACAGGCTGGAATGCAGGCAATGGGGTGCTCACTTCGTCCCTGTGGGTGGCATTGCTGGTCAATCAGATCGAGGTGCACAATCTGTTGTTCTTTCTGGTGGTTACGTGGATGATGAAGATCATGGAGAGTGGTTTCTCTACACTGGAAGCGGCGGTAAGGATCTTAGCGGCAACAAACGCACCAACAAGAGTCACTCTTTTGACCAGAAGTTTGAGAAGTACAACCTTGCACTTCAAGTTAGCTGTCTCAAAGGTTATCCTGTTCGAGTTGTCAGATCTCACAAAGAAAAGCGATCTTCATATGCCCCGGAGACTGGAGTGCGCTACGATGGAATTTATAGAATTGAAAAGTGTTGGCAGATAGCAGGAGTGCAGGGTTTCAAAGTTTGCCGGTATCTTTTCGTTAGGTGTGACAATGAGCCCGCCCCCTGGACAAGTGATGAGCGTGGAGATAGGCCCAGACCCTTGCCGGTCGTCCGTGAACTGAAAAAGGCCACCGTCATATTTGAAAGAACTGAGTCTCCATCTTGGGATTTTGATGAAGAAGATTCTCATTGGAAGTGGAAGAAATCACCGCCTCCCAGCAAACGAAAGGAGCAAAGTGCGGAACCCGTAGAGGGAGTAAGGGCATGGTCAAATAGTGAAAAAAGGAAATTCGAACTTAAGAAAATCCAGGAAAAATTGCACATGGGGTTCTCGTGCATGATATGCAAGGAGGTTATGGTTTCACCAGTGACAACACCGTGTGCTCATAACTTCTGCAAGTCCTGTTTGGAAGGTAAATTTGCTGGTCAGTCTTTTGTGAAGGAGAGAGGTGGGGGCGGGAGAACGCTTCGGTCCCAAAAAAATGTGATGCAATGTCCTTCTTGCCCCATTGACATATCTGATTATCTTCAGAACATTCAGGTTGATATAGATTTAAAGGGTGCGATTGAGTCACTCAAAGCCAATGCTGAAGAACTTGAAAAATCGCTGGAGTCTGATGAGGATGCAGGAGCAGATGAATTATATGATAATATCTGCTCTGAGGATCAAAATTCTGCAGAAGAGTTGAACAATCTACCGGAAGGATCTGATGTTGGTGAGCTCAAAGACACCAATAATGAGGGGTCAGATCCAGAAATAACGTGCAATGGAAAGAGAAAGAAAGGTGATGATGAAACACAATCGTCTGATGATAATATGGATAAAATAGATAAAAAAAACAAAATGACTGAGCAAGCAGTGGATGATAAAAATGTTTCTTCATCATCAAGTTCTCTCAATCTTCCATGA 2109 0.4803 MSMELPCDSEGVCMRCKAVPGEEERLLCITCNTPWHLSCLSTPPSTLAATTHWSCPDCSNLDPHPPLPAPQRNDLVAAMLAIENDDSLTQTQKARKRQQLIAGKAPAQDEDEEEEKEENQSKPPSVWEMLSRTIQCSICLNLPERPVTTPCGHSFCLKCFEKWVRQGKKNCAQCRQVIPAKFSSQPRINSALVFAIRMARTNSNPNASAGGDRTLNHYRHNQDRPDEPFTTERAQRAGRANAASGKIFVTVPTDHFGPITAEHDPVRNQGLLVGESWRDRLECRQWGAHFVPVGGIAGQSDRGAQSVVLSGGYVDDEDHGEWFLYTGSGGKDLSGNKRTNKSHSFDQKFEKYNLALQVSCLKGYPVRVVRSHKEKRSSYAPETGVRYDGIYRIEKCWQIAGVQGFKVCRYLFVRCDNEPAPWTSDERGDRPRPLPVVRELKKATVIFERTESPSWDFDEEDSHWKWKKSPPPSKRKEQSAEPVEGVRAWSNSEKRKFELKKIQEKLHMGFSCMICKEVMVSPVTTPCAHNFCKSCLEGKFAGQSFVKERGGGGRTLRSQKNVMQCPSCPIDISDYLQNIQVDIDLKGAIESLKANAEELEKSLESDEDAGADELYDNICSEDQNSAEELNNLPEGSDVGELKDTNNEGSDPEITCNGKRKKGDDETQSSDDNMDKIDKKNKMTEQAVDDKNVSSSSSSLNLP* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00027 702 MobiDBLite consensus disorder prediction 455 486 - -
Phac11g00027 702 SUPERFAMILY PUA domain-like 240 436 IPR015947 -
Phac11g00027 702 MobiDBLite consensus disorder prediction 204 241 - -
Phac11g00027 702 MobiDBLite consensus disorder prediction 687 702 - -
Phac11g00027 702 ProSitePatterns Zinc finger RING-type signature. 527 536 IPR017907 -
Phac11g00027 702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 201 IPR013083 -
Phac11g00027 702 Pfam SAD/SRA domain 269 417 IPR003105 -
Phac11g00027 702 CDD RING-HC_ORTHRUS_rpt1 134 179 IPR047498 -
Phac11g00027 702 Gene3D - 237 435 IPR036987 -
Phac11g00027 702 ProSitePatterns Zinc finger PHD-type signature. 13 58 IPR019786 -
Phac11g00027 702 SUPERFAMILY FYVE/PHD zinc finger 4 65 IPR011011 -
Phac11g00027 702 ProSiteProfiles Zinc finger RING-type profile. 136 175 IPR001841 -
Phac11g00027 702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 490 613 IPR013083 -
Phac11g00027 702 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 237 432 - -
Phac11g00027 702 Pfam RING-type zinc-finger 512 566 IPR027370 -
Phac11g00027 702 SUPERFAMILY RING/U-box 135 186 - -
Phac11g00027 702 SMART G9a_1 261 418 IPR003105 -
Phac11g00027 702 ProSiteProfiles YDG domain profile. 266 414 IPR003105 -
Phac11g00027 702 SMART ring_2 512 568 IPR001841 -
Phac11g00027 702 SMART ring_2 13 58 IPR001841 -
Phac11g00027 702 SMART ring_2 136 174 IPR001841 -
Phac11g00027 702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 60 IPR013083 -
Phac11g00027 702 MobiDBLite consensus disorder prediction 640 686 - -
Phac11g00027 702 SMART PHD_3 12 59 IPR001965 -
Phac11g00027 702 MobiDBLite consensus disorder prediction 88 125 - -
Phac11g00027 702 Coils Coil 589 609 - -
Phac11g00027 702 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 606 IPR045134 -
Phac11g00027 702 Pfam Zinc finger, C3HC4 type (RING finger) 136 174 IPR018957 GO:0046872
Phac11g00027 702 MobiDBLite consensus disorder prediction 628 702 - -
Phac11g00027 702 ProSiteProfiles Zinc finger RING-type profile. 512 568 IPR001841 -
Phac11g00027 702 FunFam Predicted protein 91 201 - -
Phac11g00027 702 SUPERFAMILY RING/U-box 509 593 - -
Phac11g00027 702 MobiDBLite consensus disorder prediction 216 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00027 Phac-Chr11 252949 259630 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00027 1 603 C2H2 Transcription Factor Family AT5G39550 56.748 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00027 K10638 - gmx:100801535 1084.71