Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00023 ATGCAACCCAATTCCGCCGCCAGACTTCCCAGCTTCCGCTCAACTCCGGTCACCTGGTTAGAATCAGTCCTTTTGAAGGAAGAGGAAGAGGAAGAGGAGGAGGAAGAGCAAGAAGAAAGCGAAGAAGCTGAAAAAGAGACCTTGACCTTTACCCAGCTGCTTTCTACCATCGCAGCTCCCTCTCCTTCCCGACGCCAACGCCAACGCCAACACCAAAACTATGATATACAGGATTACCCTCCCACCTCCACGCCCATCCCCAATCCAATCGCACCCAAGGAACCTGATGCTTCTCCCCCCCACATCAAAATGGACATGTTCATGTTTGAGGACTCGGCGGCTCCCTGTAGAGTTCGCGCAAAGCGTGGCTGTGCTACGCATCCCAGGAGTATTGCCGAAAGGGTTCGCAGGACTCGTATCAGTGACCGCATCAGAAAGCTTCAAGAACTTGTTCCAAACATGGATAAGCAAACAAACACTGCAGATATGTTACATGAGGCGGTAGCTTATGTCAAGTTTCTTCAAAAGCAAATTGAGGAACTGACAGAGCACCAACAGAGGTGTAGATGTATGGTTCAAGAGTAA 585 0.5009 MQPNSAARLPSFRSTPVTWLESVLLKEEEEEEEEEEQEESEEAEKETLTFTQLLSTIAAPSPSRRQRQRQHQNYDIQDYPPTSTPIPNPIAPKEPDASPPHIKMDMFMFEDSAAPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLHEAVAYVKFLQKQIEELTEHQQRCRCMVQE* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00023 194 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 192 IPR036638 GO:0046983
Phac11g00023 194 CDD bHLH_AtbHLH_like 129 181 IPR045239 -
Phac11g00023 194 Coils Coil 174 194 - -
Phac11g00023 194 Pfam Helix-loop-helix DNA-binding domain 129 175 IPR011598 GO:0046983
Phac11g00023 194 Coils Coil 20 49 - -
Phac11g00023 194 MobiDBLite consensus disorder prediction 47 81 - -
Phac11g00023 194 MobiDBLite consensus disorder prediction 25 43 - -
Phac11g00023 194 FunFam Transcription factor bHLH130 family 125 193 - -
Phac11g00023 194 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 52 188 - -
Phac11g00023 194 MobiDBLite consensus disorder prediction 82 96 - -
Phac11g00023 194 SMART finulus 130 180 IPR011598 GO:0046983
Phac11g00023 194 MobiDBLite consensus disorder prediction 24 100 - -
Phac11g00023 194 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 124 174 IPR011598 GO:0046983
Phac11g00023 194 Gene3D - 125 194 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00023 Phac-Chr11 226283 228809 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00023 108 194 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 81.609 1.06e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac11g00023 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00023 - - vum:124835640 247.669