Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g02171 ATGTTTGACTCTGGTTACAAGTCACAGTATATTGGAGGCCAGAAGGAGAAGTTCGTAAGGTTGGATGATCTGGATTCGAATTTGTCGATGCCAGCAAGCTCAAGTGGGATGAAAAAATTAAGGTTCAGTTTAGATTCTCTGCCACTTCCTGGTCGTGGAAGAAAAAAAGCATCGAAATCGTTTAAGCAAGGAGTGAAGAAGGGTTCGGATGGACTAAAAACATTTGGAAGATCACTGAAGACAGGGGTGACAACATGGGCAGTGTTCCCTGAAGACCTTAAAGTTTCAGAGAAAAAAGTATTTGACCCTCAAGACAAGACCCTTCTGTACTGGAACAAGTTTTTTGAGATTCTATGCATTTTTTCTGTGGCTTGTGATCCCTTCTTCTTTTATCTTCCTTATTTCAACCACAAATCATTTTGCCTCGCCATAGATAATGAGCTAGCAAGTTTTGCTGTCACAATGAGAACAATATGCGATGCCATTTATCTCATCCGCATAAGTTTTCAGTTCCGAACTGCTTACATTGCGCCTTCATCTCGGGTATTTGGACGAGGTGAACTTGTCATAGATCCTACAAAGATTGCCAAGAGATATTTACGACGTTACTTCATCGTTGACTTCATTTCTGTGCTCCCCATACCACAGATTGTAGTGTGGAAATATCTTTACAGATCAGGACGTGTAGAGGTATTGGAAACAAAAACGCTACTGCTGAGAATTGTGATCCTGCAATATTTTCCAAGATTTATACGTTTTCTACCTTTAGCTTCAGAAGTTAAAAAGACAGCTGGTGTTTTTTCTGAGAACGCATTGCTCGGGGCCATGTACTATTTGATCTGGTATATGCTTGCTAGTCATATAACTGGCTCTTGCTGGTACTTACTAGCCATTGAACGTAATGACACCTGCTGGAAGAATGCTTGTAAAGAAGTTGAAGGGTGCAATACACATTTCTTGTACTGTGCGAATTCGAACAAGCATATGCCAGGGTATGATAGTTGGAGAAATGTCAGCGAAGGTGTTCTGAAAAGTCGTTGCTACGTGGAGGATGGTTCCTCAGAATTTAGCTATGGAATCTTCTCTCAAGCTATAGAGTCTGATATTGTTGCTTCCATAGAAGTTTTTCCTAAATTCTGTTACTGTTTATGGTGGGGCCTTCAAAACTTGAGTACACTTGGTCAGGGGCTTCTAACCAGTACATACCCTGGAGAGGTTATGTTTTCCATAGTAATAGCTATTATGGGGCTTATCCTTTTTGCTCTTCTGATTGGAAACATGCAGACGTACCTTCAATCAATGTCAGTTCGTCTTGAGGAAATGAGGATCAAAAGACGTGACTCTGAGCAATGGATGCATCATCGTTTACTTCCTCCAGAGCTAAGGGAAAGAGTGAGACGCTATGACCAATACAAGTGGCTGAACACCCGTGGAGTAGATGAAGAGAGCTTAGTTCAGAGTCTTCCAAAAGATCTCAGGAGAGATATCAAACGGCATCTTTGTTTGAATTTAGTCAGAAGGGTTCCTCTCTTTGCCAACATGGATGAACGTTTGCTTGATGCTATATGTGAGCGATTGAAGCCTAGTTTATATACAGAGGGAACTTACATAGTGAGGGAAGGGGACCCAGTTAATGAGATGCACTTCATCATACGTGGGCGTCTAGAGAGTGTCACCACAGATGGTGGAAGAAGTGGGTTTTTCAACAGAGGTCTTCTGAAGGAAGCTGACTTCTGCGGAGAAGAGCTACTAACGTGGGCATTGGACCCCAAATCTGCAGCTAACTTGCCATCATCAACAAGGACGGTGAAGGCTATGAATGAGGTGGAGGCATTTGCTTTGGAAGCAGAGGAGTTGAAGTTTGTTGCTTCCCAGTTTAGGCACATCCACAGTAGACAGGTTCAGCACACCTTCCGTTTCTATTCACAGCAGTGGAGAACATGGGCTGCTATCTACATTCAAGCTGCATGGAGGCGGCATTGCAGGAGGAAGATAGCAGAACAGCGCAGGAGGGAGGAAGAAGAATTATATGACTCTGATTATGACAACAGTGATGATTCTGCAAGAGCCTTGGTCAAGCGTCCTGAACCTGCTGCTTTTTCCTCATCTACCCTTGGACTTGGTACAACCGTCTATGCATCTCGCTTTGCAGCAAATGCACTTCGTGGTCACAGGCTTCGTGGTTCAAGTTCCAAGGACATGATCAAACTCCAAAAGCCCCCAGAACCTGACTTCAGTGATTTTGGTGAACACTGA 2256 0.4326 MFDSGYKSQYIGGQKEKFVRLDDLDSNLSMPASSSGMKKLRFSLDSLPLPGRGRKKASKSFKQGVKKGSDGLKTFGRSLKTGVTTWAVFPEDLKVSEKKVFDPQDKTLLYWNKFFEILCIFSVACDPFFFYLPYFNHKSFCLAIDNELASFAVTMRTICDAIYLIRISFQFRTAYIAPSSRVFGRGELVIDPTKIAKRYLRRYFIVDFISVLPIPQIVVWKYLYRSGRVEVLETKTLLLRIVILQYFPRFIRFLPLASEVKKTAGVFSENALLGAMYYLIWYMLASHITGSCWYLLAIERNDTCWKNACKEVEGCNTHFLYCANSNKHMPGYDSWRNVSEGVLKSRCYVEDGSSEFSYGIFSQAIESDIVASIEVFPKFCYCLWWGLQNLSTLGQGLLTSTYPGEVMFSIVIAIMGLILFALLIGNMQTYLQSMSVRLEEMRIKRRDSEQWMHHRLLPPELRERVRRYDQYKWLNTRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEGTYIVREGDPVNEMHFIIRGRLESVTTDGGRSGFFNRGLLKEADFCGEELLTWALDPKSAANLPSSTRTVKAMNEVEAFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRRHCRRKIAEQRRREEEELYDSDYDNSDDSARALVKRPEPAAFSSSTLGLGTTVYASRFAANALRGHRLRGSSSKDMIKLQKPPEPDFSDFGEH* 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g02171 751 FunFam Cyclic nucleotide-gated ion channel 1 437 501 - -
Phac10g02171 751 MobiDBLite consensus disorder prediction 728 751 - -
Phac10g02171 751 Gene3D - 112 435 - -
Phac10g02171 751 ProSiteProfiles IQ motif profile. 646 675 IPR000048 GO:0005515
Phac10g02171 751 Gene3D Helix hairpin bin 437 501 - -
Phac10g02171 751 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 92 745 - -
Phac10g02171 751 SMART cnmp_10 510 641 IPR000595 -
Phac10g02171 751 ProSiteProfiles cAMP/cGMP binding motif profile. 510 593 IPR000595 -
Phac10g02171 751 CDD CAP_ED 510 641 IPR000595 -
Phac10g02171 751 FunFam Cyclic nucleotide-gated ion channel 1 508 626 - -
Phac10g02171 751 Pfam Cyclic nucleotide-binding domain 531 620 IPR000595 -
Phac10g02171 751 Pfam Ion transport protein 110 437 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Phac10g02171 751 Gene3D Jelly Rolls 508 628 IPR014710 -
Phac10g02171 751 SUPERFAMILY Voltage-gated potassium channels 102 432 - -
Phac10g02171 751 SUPERFAMILY cAMP-binding domain-like 440 630 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g02171 Phac-Chr10 42833712 42837622 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g02171 6 745 Ion Channels AT1G15990 69.241 0.0 1020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g02171 K05391 - gmx:100810453 1338.94