LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac10g02149	ATGGACAGCGAGGAAGTCCCTTCAGCACCTTCAACACCTGCAACACCAGGAACTCCAGCGGTCCCTCTGTTTGGTGGCCTCAGGTTTGAGAAACCTAATGTTGTTAGGAAATCATCCTTCCTCAGAAGCTGCAAATGCTTCAGTGTTGAAGAATGGACCTTGGAAGATGGAGCCATGCCTAGAGCCTCTTGCTCTTTACCAGCCCCTCCCATCCCTCTAGCAAAAAAGGTTGGAGCTGAGTTTATAGGCACGTTCATTCTGATGTTTGCCGCTATAGGCACTGCTATTGTGAACCAAAAGACTCATGGCTCAGAAACTCTAATTGGATGTGCTGCAGCAAATGGACTTGCTGTCATGATCATCATTTTCTCCACTGGTCACATCTCTGGGGCTCATCTCAACCCCGCTGTCACCATTTCCTTCGCTGCACTAAAGCACTTTCCTTGGAAGAATGTGCCAGTGTATATTGGTACACAAATTTTGGCATCAGTGAGTGCTGCATTTGCAGTGAAGGCGGTTTTTCATCCCTTCATGAGCGGTGGAGTGACGGTCCCTTCTGTGGGATATGGGCAAGCTTTCGCCACAGAGTTCATTGTCAGCTTTATTCTCATGTTCGTGGTCACTGCAGTAGCCACCGACACAAGAGCTGTGGGAGAGCTTGCAGGAATAGCAGTGGGAGCCACAGTTATGCTCAACATACTTATAGCCGGGTATATGTCCCAACTTGTTATTCAAATACACTACTACCACTAA	753	0.4794	MDSEEVPSAPSTPATPGTPAVPLFGGLRFEKPNVVRKSSFLRSCKCFSVEEWTLEDGAMPRASCSLPAPPIPLAKKVGAEFIGTFILMFAAIGTAIVNQKTHGSETLIGCAAANGLAVMIIIFSTGHISGAHLNPAVTISFAALKHFPWKNVPVYIGTQILASVSAAFAVKAVFHPFMSGGVTVPSVGYGQAFATEFIVSFILMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGYMSQLVIQIHYYH*	251

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac10g02149	250	PRINTS	Major intrinsic protein family signature	151	170	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Phac10g02149	250	PRINTS	Major intrinsic protein family signature	195	213	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Phac10g02149	250	PRINTS	Major intrinsic protein family signature	75	94	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Phac10g02149	250	PRINTS	Major intrinsic protein family signature	114	138	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Phac10g02149	250	PANTHER	AQUAPORIN NIP2-1	46	240	IPR034294	-
	Phac10g02149	250	Pfam	Major intrinsic protein	74	240	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Phac10g02149	250	Gene3D	Glycerol uptake facilitator protein.	69	245	IPR023271	-
	Phac10g02149	250	ProSitePatterns	MIP family signature.	132	140	IPR022357	-
	Phac10g02149	250	SUPERFAMILY	Aquaporin-like	72	241	IPR023271	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac10g02149	Phac-Chr10	42732830	42736531	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac10g02149	1	237	Major Intrinsic Protein MIP	AT1G80760	73.554	6.42e-122	347

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac10g02149	K09874		-	gmx:100798410	418.313