Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g02146 ATGGATCTTCAAAGGCAAGAGCCATGCCCTTCAGAAAGCTTGAACATCATCACATTTTCAGATACTATGCCATGCCAAAAATCTTCCATAGACACTCAAAAAAAGAGGAATCACGCAGAAAGTGATGATCAAAAACACCCACATGACTCAATTCCTCGTGTTTTACTAGATCTAAGTCTCTCCAACAAGGATTCCGGTGATGATGACTCAAAACCAGAACTCAACCTCCTCAATTGTTTCCATACGAATTTCTCTGAAAATTCATCAGAGTCTAGTCAGGGAAATGAACTGGATCCCCGGGTCTTCTCATGCAACTACTGCCAAAGAAAGTTTTATAGTTCTCAGGCACTTGGGGGACACCAGAATGCACACAAACGTGAAAGAACTTTAGCAAGAAGAGGATACAAAGCAGGTGCAGCAGATTTTGGACACACGTACTCCACCATGCCTTTTCTTCCTTCTCATGGCTTATACAACAAATCACTTGGAATTCAGGTTCATGCCATGATTAACAAACCTTCTCATCAAACACCCTTTTTCGGGTTGTGCCATTCCAAAGGGTGGCAGAGGCAGCCTTTGGATTCACAACCAGCAATTGGAAATTTTCGTGTGGTGGCAGAAACTGAGTCATCCTTGGCTGATAGTGTTCCAAAGTTAGGCAAGTTTTCCACAAGGCTGGTGTCAGAGGGATTTGGAGGTTTCTGCTTTGGTAGCATTACTCATTTGAAGTCTAAACAAGAGAAGTTGCAGAAGCTTGACTTGTCCCTTAAGCTCTAA 777 0.4273 MDLQRQEPCPSESLNIITFSDTMPCQKSSIDTQKKRNHAESDDQKHPHDSIPRVLLDLSLSNKDSGDDDSKPELNLLNCFHTNFSENSSESSQGNELDPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLARRGYKAGAADFGHTYSTMPFLPSHGLYNKSLGIQVHAMINKPSHQTPFFGLCHSKGWQRQPLDSQPAIGNFRVVAETESSLADSVPKLGKFSTRLVSEGFGGFCFGSITHLKSKQEKLQKLDLSLKL* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g02146 258 Gene3D Classic Zinc Finger 80 141 - -
Phac10g02146 258 MobiDBLite consensus disorder prediction 20 53 - -
Phac10g02146 258 MobiDBLite consensus disorder prediction 31 52 - -
Phac10g02146 258 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Phac10g02146 258 FunFam Zinc finger protein 2 80 148 - -
Phac10g02146 258 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 258 IPR044246 GO:0009788
Phac10g02146 258 SUPERFAMILY beta-beta-alpha zinc fingers 99 129 IPR036236 -
Phac10g02146 258 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g02146 Phac-Chr10 42716379 42718099 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g02146 1 258 C2H2 Transcription Factor Family AT5G10970 38.351 1.69e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac10g02146 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g02146 - - gmx:100816861 415.616