Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g02130 ATGGGGGAGCCATGCCACAAATATTGGTTCTCTGATATGCATGCACAAGAGAAACCTGCCACAGCCACCACTTCTCCAACTGCGTACATTCTATCTTTCAATGACTCCACTGTGGTTGCAGCTACCTGCCAAACCTACGGTGGAAAACAGCCGTACCAAGAGGAAGTTGTTGTGGGGAGTGGTGGCGCGTGTCTTCCCTCAAAAGGGGTCTCAGAAAAACATTACATTGAACCTAAGCCCAACCCAGCAACAAGAAAAGGAAGAAGTTCTGCCGAGACACTAGACCATATAATGACTGAGAGAAAAAGGAGACGGGAACTCACAGAAAGATTCATTGCACTTTCAGCCACCATACCTGGTTTGAAGAAGATTGACAAGGCCACTATACTTTGCGAAGCCATAACTTATGTGAAACGACTTAAAGAACGAGTAAGAGAGCTAGAAGAACAATGTAAGAGGACAAGGGTAGAGTCAGTGTCATTTGTTCATCAGAGATCCAATATTGGTAGTGACAAAGGCACAACCTCTGGTGCAATGAAATCTGATGAATGCTATAAAACCAGTGAAGCACTCCCTACAGTGGAAGCAAGAGTGTTTAAAAAAGATCTACTCATTCGGATTCACTGCAAGATACAAAATGGCATTTTGATCAAAATTTTGGACCATCTTAACACTCTTGATCTCTACACAACCAGCAACAGTGTAATGCCATTTGGAAGTTCAACTCTTGACATTAGCATTGTTGCTCAGATGGGTGACAAATTCAACGCAACAATGAATGATCTAGTGAAAAACCTGAGACTGGTTCTCTTGCAGTCATCTGAAGTTCAACAATGA 837 0.4277 MGEPCHKYWFSDMHAQEKPATATTSPTAYILSFNDSTVVAATCQTYGGKQPYQEEVVVGSGGACLPSKGVSEKHYIEPKPNPATRKGRSSAETLDHIMTERKRRRELTERFIALSATIPGLKKIDKATILCEAITYVKRLKERVRELEEQCKRTRVESVSFVHQRSNIGSDKGTTSGAMKSDECYKTSEALPTVEARVFKKDLLIRIHCKIQNGILIKILDHLNTLDLYTTSNSVMPFGSSTLDISIVAQMGDKFNATMNDLVKNLRLVLLQSSEVQQ* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g02130 278 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 91 140 IPR011598 GO:0046983
Phac10g02130 278 Gene3D - 84 157 IPR036638 GO:0046983
Phac10g02130 278 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 95 166 IPR036638 GO:0046983
Phac10g02130 278 Coils Coil 137 157 - -
Phac10g02130 278 SMART finulus 97 146 IPR011598 GO:0046983
Phac10g02130 278 Pfam Helix-loop-helix DNA-binding domain 96 140 IPR011598 GO:0046983
Phac10g02130 278 PANTHER BHLH TRANSCRIPTION FACTOR 20 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g02130 Phac-Chr10 42620439 42622966 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g02130 87 270 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.935 1.75e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac10g02130 HLH 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g02130 - - gmx:100777846 412.535