Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g02122 ATGATGGAGGACTCATGGCAGAACTGGCTCTCTCATTTGGGAATGAATGAGAACTTTGGGTGCACCAGCAATGTATGCTTTGAAGAGATGGTGTGGTTGGATAATGGGCAAGGTTGTGATAGCTCCAATAATGAGGTAGCTTGCATGGGGATGAAGGAGGAACATTCAGAGTGTTGTTGCAGTAAAAGGGGTGCTGGGAAGCATGAGGAGTTGGAGGAAAAGGGAAGGGAGAAGAGAGGAACAAAAAGAACAAGAACCTCTTCTGAGATAGAATATCACATAATCTCTGAGAGAAAAAGGAGACAGGATATAGCAGAGAAATTCATAGAACTCTCAGCTACTATACCTGGCTTGAAGAAGATAGACAAGGCCTCTATACTTGGGGAAGCCATAAAGTACATGCGACAACTTCAACAACGCATAGCAGTGTTGGAAAAAGCAAGCAACAATAACAGTGCAAAGTCGTTGATCATCACCAAATCACACCTTTGTTCTTCAACATCATGTGAACAAAACTCTAACATTGAAGTTGAAGCAAGGGAATTGGAGAATGAAGTGCTGATTAGAATCTATTGTGAGCAACAAAAGGACATCATGCTAAACCTAATTACCCTTCTAAAAGATCTTCATCTCTCAGTAACCACTAGCACTCTATTGCCATTTGGAAACTCTCTTCTCAACATTATCATTGTTGCTCAGATGAATGAGGAGTACAAGTTGAGGGTAACTGATTTGGTTAAGACATTGAAGCAGAATCTTTTCAAGTTTTATGAGGTGTAA 780 0.4064 MMEDSWQNWLSHLGMNENFGCTSNVCFEEMVWLDNGQGCDSSNNEVACMGMKEEHSECCCSKRGAGKHEELEEKGREKRGTKRTRTSSEIEYHIISERKRRQDIAEKFIELSATIPGLKKIDKASILGEAIKYMRQLQQRIAVLEKASNNNSAKSLIITKSHLCSSTSCEQNSNIEVEARELENEVLIRIYCEQQKDIMLNLITLLKDLHLSVTTSTLLPFGNSLLNIIIVAQMNEEYKLRVTDLVKTLKQNLFKFYEV* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g02122 259 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 88 137 IPR011598 GO:0046983
Phac10g02122 259 PANTHER BHLH TRANSCRIPTION FACTOR 47 256 - -
Phac10g02122 259 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 91 152 IPR036638 GO:0046983
Phac10g02122 259 Coils Coil 134 154 - -
Phac10g02122 259 Gene3D - 84 150 IPR036638 GO:0046983
Phac10g02122 259 Pfam Helix-loop-helix DNA-binding domain 93 138 IPR011598 GO:0046983
Phac10g02122 259 SMART finulus 94 143 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g02122 Phac-Chr10 42600533 42605064 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g02122 67 256 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 35.644 1.67e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac10g02122 HLH 1.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g02122 - - gmx:100778916 307.375