Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g02036 ATGGTTGGAGGTTCCTTAGCAGGGTTGCAAGAGCACCTCAAGTTAGCAAGAGACTACGCTGTGGAAGGGCTCTACGACACCTCCACCATCTTCTTCGACGGTGCACTTGCTCAGATCAACAAGCACCTAACCACCGTAGAGGACCCTTTGATTCGCGCAAAATGGATGAATGTGAAGAAAGCGCTTTCGGAAGAAACCGAAGTTGTGAAACAGTTAGATGCAGAGAGAAGGGCTTTCAAAGAAAACCCCATTGGAAGACGCGCCGTTTCGCCTCCCATTTCTGCCAAGTCCTCGTCTTTCGTTTTTCAGCCGTTGGATGAGTACCCCACTTCATCAAGCGGTCCTGGTCCTGTTGATGATCCCGATGTATGGCGGCCACCCAGTAGGGATACCAGTAGGAGACCCGCCAGGTCCGGTCAAGTGGGTACCCGCAAATCTCCCCAAGATGGGGCCTGGGCGCGCGGTGCTACTGCTAGAAGTGGTTCTACTGGGCGTGGTGGTGCTAAAGGTGGAGCTACCAGTAGGGTTAACTCGGGGACACGAGCATCCGCTACAGGGAAGAAAGGCAATGTTTCTGGAAAGTCTACCAAGACTGATACTGCAGCTGTAACTAATGGTCAAAATGGTGATTCTGAAGATGGTAAGTCAAAGAAGGGTCAATATGAAGGTGCTGATCCTGAATTGGCTGCAATGCTTGAAAGGGACGTGTTAGAAACCTCTCCTGGAGTTAGATGGGACGATGTTGCAGGACTTACTGAAGCAAAAAGGCTTCTAGAAGAAGCTGTTGTGCTTCCCTTGTGGATGCCTGAATATTTCCAGGGTATCAGGAGACCATGGAAAGGTGTTCTTATGTTTGGACCTCCAGGAACTGGGAAGACTCTTCTTGCTAAGGCAGTTGCTACTGAATGTGGGACCACTTTCTTTAATGTATCTTCTGCAACTTTGGCTTCTAAATGGCGTGGTGAGAGTGAGCGCATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGCACAATATTTATTGACGAAATTGATTCTCTATGCAATGCAAGGGGGGCATCTGGGGAGCATGAATCGTCTAGAAGGGTGAAATCTGAACTTCTAGTTCAGGTTGATGGTGTAAGCAATAGTGCCACAAATGAAGATGGTAGCCGTAAAATAGTAATGGTTTTGGCCGCAACTAACTTCCCATGGGATATAGATGAGGCATTAAGGAGAAGGCTGGAAAAGCGTATATATATTCCTCTTCCAAATTTTGAGAGTCGCAAAGAGCTGATCCGGATAAATTTGAAGACTGTTGAGGTGGCGGCTGATGTGAATATAGATGAAGTGGCTCGCCGGACAGAGGGCTATAGTGGAGATGATTTGACTAATGTCTGTCGAGACGCTTCCTTAAACGGTATGAGGCGAAAGATAGCAGGAAAGACTCGTGACGAAATCAAGAACATGTCCAAGGATGAGATTTCAAAGGATCCCGTTGCCATGTGTGATTTTGAAGAAGCTTTGGTAAAGGTCCAACGAAGTGTTTCTCAGGCTGATATTGAACGCCACGAGAAGTGGTTTACCGAGTTTGGATCAGCATAA 1593 0.4752 MVGGSLAGLQEHLKLARDYAVEGLYDTSTIFFDGALAQINKHLTTVEDPLIRAKWMNVKKALSEETEVVKQLDAERRAFKENPIGRRAVSPPISAKSSSFVFQPLDEYPTSSSGPGPVDDPDVWRPPSRDTSRRPARSGQVGTRKSPQDGAWARGATARSGSTGRGGAKGGATSRVNSGTRASATGKKGNVSGKSTKTDTAAVTNGQNGDSEDGKSKKGQYEGADPELAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVSNSATNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAADVNIDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALVKVQRSVSQADIERHEKWFTEFGSA* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g02036 530 CDD Kp60-NTD 7 75 - -
Phac10g02036 530 Pfam ATPase family associated with various cellular activities (AAA) 282 419 IPR003959 GO:0005524|GO:0016887
Phac10g02036 530 FunFam Katanin p60 ATPase-containing subunit A1 4 80 - -
Phac10g02036 530 PANTHER AAA DOMAIN-CONTAINING 25 529 - -
Phac10g02036 530 FunFam Katanin p60 ATPase-containing subunit A1 240 408 - -
Phac10g02036 530 Pfam Vps4 C terminal oligomerisation domain 483 528 IPR015415 -
Phac10g02036 530 SMART AAA_5 278 421 IPR003593 GO:0016887
Phac10g02036 530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 242 526 IPR027417 -
Phac10g02036 530 Pfam AAA+ lid domain 441 482 IPR041569 -
Phac10g02036 530 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 7 530 IPR028596 GO:0008017|GO:0008568|GO:0051013
Phac10g02036 530 Gene3D - 4 80 - -
Phac10g02036 530 Gene3D - 420 506 - -
Phac10g02036 530 ProSitePatterns AAA-protein family signature. 391 410 IPR003960 GO:0005524|GO:0016887
Phac10g02036 530 Gene3D - 240 521 IPR027417 -
Phac10g02036 530 MobiDBLite consensus disorder prediction 104 222 - -
Phac10g02036 530 FunFam Katanin p60 ATPase-containing subunit A1 420 506 - -
Phac10g02036 530 MobiDBLite consensus disorder prediction 173 210 - -
Phac10g02036 530 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g02036 Phac-Chr10 42098021 42102466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g02036 203 522 Calmodulin-binding Proteins AT3G56690 37.574 2.76e-52 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g02036 K07767 - gmx:100787634 943.34