Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g02000 ATGTCGTCTCCGTCGCCGGCGGAGACTCCTTCCGACGTTAACTCCACTGCCTCTCCTCCTCCTCCGGATGAAACACCTCTCGTACCTAACGCAACTGTATCCCCTCCTCCGCCTACCGACACCACCAACGCCACCGTTACTCCTCCTCCGCCGTCAGCCGCAGCTCCGGGTAGTTCCGGGTTGTCGCCGGGTACATTGAGTGGGATAATTATAGGGGCCGTGTTAGGTGCAGTAGGTATGCTTATTGTTGGGGGCATTTTCTTTTGCGTCTATAGGAATTGGAAAAAGAAGAGAAGCCAGAACAACTACTCTCAACCGCCACAACCGAAAGCTGACATGGCTGGTGGTGGCAACCTTCAGCATTGGCATGACAGTGTTTCTCCAACGACAGATGGTAAAGTGGGCTTGCCGCCCAAGCCTAGTCCTGGGGGTTTAGTGAATCATAAACTGTCATCCGCTGGTCTCCCCACACCAACTGTCAATTCTTCAGGCACTGGCAGTAGTTTGGGGTCCGAAAAGGTGCAGCCTTCACCTGGCATTTCCTTGGCGCTATCATCTCAAAGCACTTTTACACACGATGAGTTAGCTATGGCAACGGATGGATTCTCCAACTCAAATCTTCTTGGTCAAGGTGGTTTTGGCTATGTCCACAAAGGACTTCTCCCAAATGGGAAAATTGTTGCAGTCAAGCAGTTGAAATCTGAGAGTAGACAAGGTGAGCGTGAGTTCCATGCAGAGGTCGAGGTCATTAGCCGTGTGCATCACAGACACCTTGTTTCCCTAGTTGGTTACTGCATATCAGACAACCAGAAGATGCTTGTCTACGAGTATGTGCCAAATGATACTCTAGAATTTCATTTGCATGGAAAGGACAGACCATCAATGGACTGGTCGACAAGGATGAAGATTGCTATAGGATCTGCAAAAGGATTGGCATACCTGCACGAGGACTGTAATCCCAAAATCATACACCGAGACATCAAGGCATCTAACATTCTTATTGATGATAGTTTTGAGGCTAAGGTTGCAGATTTTGGACTTGCAAAGTTTTCATCAGACACAGAAACCCATGTTTCTACTCGAGTGATGGGAACTTTTGGATACATGGCTCCAGAATATGCTGCTAGTGGGAAACTAACTGAAAAGTCAGATGTTTTCTCCTTTGGTGTTGTGCTTTTGGAGTTGATCACTGGACGGAAACCCGTTGATAAAAGTCATCCCTTCTTAGATGACAGCATGGTTGAATGGGTATGTAGCATTCAGTACTTCATTTATGTTTTTGCTTAG 1287 0.4747 MSSPSPAETPSDVNSTASPPPPDETPLVPNATVSPPPPTDTTNATVTPPPPSAAAPGSSGLSPGTLSGIIIGAVLGAVGMLIVGGIFFCVYRNWKKKRSQNNYSQPPQPKADMAGGGNLQHWHDSVSPTTDGKVGLPPKPSPGGLVNHKLSSAGLPTPTVNSSGTGSSLGSEKVQPSPGISLALSSQSTFTHDELAMATDGFSNSNLLGQGGFGYVHKGLLPNGKIVAVKQLKSESRQGEREFHAEVEVISRVHHRHLVSLVGYCISDNQKMLVYEYVPNDTLEFHLHGKDRPSMDWSTRMKIAIGSAKGLAYLHEDCNPKIIHRDIKASNILIDDSFEAKVADFGLAKFSSDTETHVSTRVMGTFGYMAPEYAASGKLTEKSDVFSFGVVLLELITGRKPVDKSHPFLDDSMVEWVCSIQYFIYVFA* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g02000 428 SUPERFAMILY Protein kinase-like (PK-like) 177 408 IPR011009 -
Phac10g02000 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 322 334 IPR008271 GO:0004672|GO:0006468
Phac10g02000 428 MobiDBLite consensus disorder prediction 15 56 - -
Phac10g02000 428 Gene3D Phosphorylase Kinase; domain 1 167 277 - -
Phac10g02000 428 ProSiteProfiles Protein kinase domain profile. 202 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac10g02000 428 MobiDBLite consensus disorder prediction 98 180 - -
Phac10g02000 428 Pfam Protein tyrosine and serine/threonine kinase 205 405 IPR001245 GO:0004672|GO:0006468
Phac10g02000 428 FunFam Proline-rich receptor-like protein kinase PERK8 174 277 - -
Phac10g02000 428 Gene3D Transferase(Phosphotransferase) domain 1 278 423 - -
Phac10g02000 428 FunFam proline-rich receptor-like protein kinase PERK8 278 422 - -
Phac10g02000 428 SMART serkin_6 202 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac10g02000 428 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 81 419 IPR047117 -
Phac10g02000 428 MobiDBLite consensus disorder prediction 152 180 - -
Phac10g02000 428 ProSitePatterns Protein kinases ATP-binding region signature. 208 230 IPR017441 GO:0005524
Phac10g02000 428 MobiDBLite consensus disorder prediction 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g02000 Phac-Chr10 41881726 41887093 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g02000 49 417 Trihelix Transcription Factor Family AT1G70460 53.846 2.21e-124 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Phac10g02000 PK_Tyr_Ser-Thr 4.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g02000 - - ccaj:109808169 624.394