Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01965 ATGTCTGCACCCTTGGAACATGATTACATAGGCTTAGCAGATACTCCATACATGGAGAAAAGCTGTGACAAGATATCCTCTTCAGTTTCATCCAACATCTCCTCTGAGGATGACAACACTTCATCTCTCAACTTCAAGGAGACAGAGCTGAGGCTTGGCCTGCCCGGTTGTGAGTCTCCTGAGAACAAATCAGGAGCAGCCGGGATCTCTCTTTTTGGCAAGGATTTGCAGAATAATAATGGCTATTCTGCTTCCTCAACCCCTTCCAAGAACCTCAAGAGGGGTTTCTCTGATGCCATTAGCTCCTCCTCCTCCTCCTCCTCTTCTGGGAAATGGATTTTCTCAGGCAGTGATGCAACTGGGGATGATTTGAGAAATGGTGTTAATACCTCTGCACTATGCAACACAGAGGTTGGTTGCTTGGTTCTTCACTCTCAGAAGCCGCCTCAGGTTGCTGCAACAATTGAACATGCTGCTACTCCTGCTGCAAAAGCTCAAGTTGTGGGATGGCCACCAATTCGATCTTTTAGGAAGAACGCAATGGCCTATAATTTGGCAAAAAGCAACACTGAAGCTGAGGAGAAATCAAGAGTTGGTTGTCTTTATGTTAAGGTCAGCATGGATGGTGCCCCTTATCTCAGAAAGGTTGATCTGAAAACCCACAGCAACTATATTGAACTTTCTTCTGCTCTTGAGAAAATGTTCAGCTGCTTTACCATTGGTCAATGCAGTTCAGGTGGAGTTGCTGGGAAAGAGGGATTGAGGGAGAGAGCTTTCAGGGATGTTGTTGATGGCTCTGAATATGTTTTTACATATGAAGATAAAGATGGAGATTGGATGCTTGTGGGTGATGTCCCTTGGGAGATGTTCACTGAGTCATGTAAGAAACTAAGGATAATGAAAGGCTCTGAGGCAATTGGACTTGCTCCAAGGGCAATGGAGAAATGTAGGAGGCAATACTAG 963 0.4517 MSAPLEHDYIGLADTPYMEKSCDKISSSVSSNISSEDDNTSSLNFKETELRLGLPGCESPENKSGAAGISLFGKDLQNNNGYSASSTPSKNLKRGFSDAISSSSSSSSSGKWIFSGSDATGDDLRNGVNTSALCNTEVGCLVLHSQKPPQVAATIEHAATPAAKAQVVGWPPIRSFRKNAMAYNLAKSNTEAEEKSRVGCLYVKVSMDGAPYLRKVDLKTHSNYIELSSALEKMFSCFTIGQCSSGGVAGKEGLRERAFRDVVDGSEYVFTYEDKDGDWMLVGDVPWEMFTESCKKLRIMKGSEAIGLAPRAMEKCRRQY* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01965 320 MobiDBLite consensus disorder prediction 82 111 - -
Phac10g01965 320 Gene3D - 194 313 - -
Phac10g01965 320 FunFam Auxin-responsive protein 195 312 - -
Phac10g01965 320 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 42 307 IPR003311 GO:0005634|GO:0006355
Phac10g01965 320 Pfam AUX/IAA family 47 311 IPR033389 -
Phac10g01965 320 SUPERFAMILY CAD & PB1 domains 200 301 - -
Phac10g01965 320 ProSiteProfiles PB1 domain profile. 200 302 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01965 Phac-Chr10 41746981 41749833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01965 188 305 B3 DNA Binding Superfamily AT2G46530 31.933 6.00e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Phac10g01965 AUX_IAA 1.3e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01965 K14484 - gmx:100795203 470.314