Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01920 ATGTGGCAAAGAAGCCACAGATCTTCAGAGGAGAGGACACTGGAGCTTAGGCTTGGTCCACCTAGTGAAGAGTCTCTCAATGGAAGCATCAAAAAGTGCTTCACAGAAAGAAATGAATCACCCCTTACTCTTGGTTACTCCTTAACTCACGAAATTTCCACTTCTGACAAGCCAGGTCCAGGTGAGGCTATGTTAACCACTGCATGGCGTTCCACATCCTACCACCAACACCAGGCTAAACCCAAAGCTCCATCATTTTTTCAACTCCAATCAAGGCCACAAAACATGTTAATGATGAGAAAGGAAGTTCCACAACTTTGTTGTGTAGAGAACATGGCATTCTCACCCTCTTCTGCAGATGCAGCTGTGTCCAAAAGAACTGCTTCAGGTCCAGTAGTGGGTTGGCCTCCAATTCGTTCCTTCAGGAAGAACATTGCAAGTGGAAGCTCTTCTAAGCTGCCTACTGGGTCCCAACAGCATCAACATGTTGTTCCAGACAACGTTGCTAGCAAAAAAACCACTCACAACAACTGTGGCAAAGGCTTCTTTGTGAAGATCAATATGGATGGTGTTCCTATAGGAAGAAAACTGAACATCAATGCTTATAACAGCTATGAAAAACTTTCCTCTGCTGTCGATGAGCTCTTTAGAGGCCTTCTTGCAGAGATGAAGTTATCTCATATTGCCTCTTCCCAGTCTTGTTCTGCACAAAGAGATTCCAGTGCTGGTGGAATTCAAAACAAGGGAGAGGAACACAAAGAGAAAGCCAACACAGGTTTGTTGGTTGGAAGTGGAGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAGCATGCTTGTTGGAGATGTACCTTGGCACATGTTTGTGTCGACAGTTAGGAGGCTGAGGGTGTTAAAGAGTTCTGATCTCCCTGCTTTTACACTTAGTAGTAAGCAAGACTAG 945 0.4423 MWQRSHRSSEERTLELRLGPPSEESLNGSIKKCFTERNESPLTLGYSLTHEISTSDKPGPGEAMLTTAWRSTSYHQHQAKPKAPSFFQLQSRPQNMLMMRKEVPQLCCVENMAFSPSSADAAVSKRTASGPVVGWPPIRSFRKNIASGSSSKLPTGSQQHQHVVPDNVASKKTTHNNCGKGFFVKINMDGVPIGRKLNINAYNSYEKLSSAVDELFRGLLAEMKLSHIASSQSCSAQRDSSAGGIQNKGEEHKEKANTGLLVGSGEYTLVYEDNEGDSMLVGDVPWHMFVSTVRRLRVLKSSDLPAFTLSSKQD* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01920 314 MobiDBLite consensus disorder prediction 236 257 - -
Phac10g01920 314 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 13 303 IPR003311 GO:0005634|GO:0006355
Phac10g01920 314 Gene3D - 176 312 - -
Phac10g01920 314 MobiDBLite consensus disorder prediction 1 18 - -
Phac10g01920 314 SUPERFAMILY CAD & PB1 domains 173 298 - -
Phac10g01920 314 MobiDBLite consensus disorder prediction 1 28 - -
Phac10g01920 314 FunFam Auxin-responsive protein 176 313 - -
Phac10g01920 314 Pfam AUX/IAA family 14 304 IPR033389 -
Phac10g01920 314 ProSiteProfiles PB1 domain profile. 181 301 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01920 Phac-Chr10 41545692 41548999 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01920 193 309 B3 DNA Binding Superfamily AT5G20730 23.932 6.25e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Phac10g01920 AUX_IAA 8.5e-63 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01920 K14484 - gmx:100793822 467.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac10g01920 10 41545692 41548999 Phac5g02487 5 42961257 42965542 ECH
Phac10g01920 10 41545692 41548999 Phac10g01920 10 41545692 41548999 ECH
Phac5g02487 5 42961257 42965542 Phac10g01920 10 41545692 41548999 PCT