Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01919 ATGTGGCAAAGAAGCCACAGATCTTCAGAGGAGAGGACACTGGAGCTTAGGCTTGGTCCACCTAGTGAAGAGTCTCTCAATGGAAGCATCAAAAAGTGCTTCACAGAAAGAAATGAATCACCCCTTACTCTTGGTTACTCCTTAACTCACGAAATTTCCACTTCTGACAAGCCAGGTCCAGGTGAGGCTATGTTAACCACTGCATGGCGTTCCACATCCTACCACCAACACCAGGCTAAACCCAAAGCTCCATCATTTTTTCAACTCCAATCAAGGCCACAAAACATGTTAATGATGAGAAAGGAAGTTCCACAACTTTGTTGTGTAGAGAACATGGCATTCTCACCCTCTTCTGCAGATGCAGCTGTGTCCAAAAGAACTGCTTCAGGTCCAGTAGTGGGTTGGCCTCCAATTCGTTCCTTCAGGAAGAACATTGCAAGTGGAAGCTCTTCTAAGCTGCCTACTGGGTCCCAACAGCATCAACATGTTGTTCCAGACAACGTTGCTAGCAAAAAAACCACTCACAACAACTGTGGCAAAGGCTTCTTTGTGAAGATCAATATGGATGGTGTTCCTATAGGAAGAAAACTGAACATCAATGCTTATAACAGCTATGAAAAACTTTCCTCTGCTGTCGATGAGCTCTTTAGAGGCCTTCTTGCAGAGATGAAGTTATCTCATATTGCCTCTTCCCAGTCTTGTTCTGCACAAAGAGATTCCAGTGCTGGTGGAATTCAAAACAAGGGAGAGGAACACAAAGAGAAAGCCAACACAGGTTTGTTGGTTGGAAGTGGAGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAGCATGCTTGTTGGAGATGTACCTTGGCACATGTTTGTGTCGACAGTTAGGAGGCTGAGGGTGTTAAAGAGTTCTGATCTCCCTGCTTTTACACGTGAGTTGGAGTATTTTAACTTGATTGAGAAGAACTGGTTCATTATTAGTGTGATCAATGATTGA 990 0.4364 MWQRSHRSSEERTLELRLGPPSEESLNGSIKKCFTERNESPLTLGYSLTHEISTSDKPGPGEAMLTTAWRSTSYHQHQAKPKAPSFFQLQSRPQNMLMMRKEVPQLCCVENMAFSPSSADAAVSKRTASGPVVGWPPIRSFRKNIASGSSSKLPTGSQQHQHVVPDNVASKKTTHNNCGKGFFVKINMDGVPIGRKLNINAYNSYEKLSSAVDELFRGLLAEMKLSHIASSQSCSAQRDSSAGGIQNKGEEHKEKANTGLLVGSGEYTLVYEDNEGDSMLVGDVPWHMFVSTVRRLRVLKSSDLPAFTRELEYFNLIEKNWFIISVIND* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01919 329 SUPERFAMILY CAD & PB1 domains 173 298 - -
Phac10g01919 329 MobiDBLite consensus disorder prediction 236 256 - -
Phac10g01919 329 MobiDBLite consensus disorder prediction 1 18 - -
Phac10g01919 329 Pfam AUX/IAA family 14 304 IPR033389 -
Phac10g01919 329 FunFam Auxin-responsive protein 176 311 - -
Phac10g01919 329 MobiDBLite consensus disorder prediction 1 28 - -
Phac10g01919 329 ProSiteProfiles PB1 domain profile. 181 301 IPR000270 GO:0005515
Phac10g01919 329 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 13 303 IPR003311 GO:0005634|GO:0006355
Phac10g01919 329 Gene3D - 176 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01919 Phac-Chr10 41545692 41548999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01919 139 318 B3 DNA Binding Superfamily AT3G61830 20.106 2.10e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Phac10g01919 AUX_IAA 9.6e-63 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01919 K14484 - gmx:100793822 457.988