Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01870 ATGGCTTGCTTCGGAAGCACAATAGATAACTTCTCCTGCATTTGCCTTGGAGATTTCAGTTTGGCTTCCTTTTCCAGCCAAAGGTGCATAATAGATATTGTCAACATGTTTTTCCTGTGTGTCTTTTATGTATCATTGCTCTCCAATCTGATCAAGAAAAGACCTGCAAATGCAAGTGGTAACTACAGAAAGGGATTGGTTCGGGTAGTTACTTCATTCTGTTGTACTATTTTAAGCATTGCATATTTTATGGATGGTTTGTGGAATGTCATAACCAAAACCTCAGGCTTCAATCAGCTGAACTTGTTGGTTTGCTTTGTGAGAGGACTAGTTTGGATATCTTTAGCAGCTTCATTGTTTGTTCAAAGGTTTCAATGGATAAAAAAATTATGCTCTATTTGGTGGGTGTTTTCATGCACATTGGTTTCAGTACTCAATGCTGAAATTCTGGTCAAAGAGCATAGATTTCAAATTTTTGATATGGCAATGTGGCCAGTGCACATCCTAACTGTTCTCTGTGCCTTCCAAAACCATGGCTACTTTGTCCCACAAGAAATCCCAGGTGCCAGTTTATGTGATCCTCTATTAGTTCATAAGGAAATGCATAAACAAACAGGACTGGGCCATGCCTCCTTTCTCAGCAGATTCACTTTCTCTTGGATGAATGCTTTGCTCAGTTTGGGTTACTCAAAGCCACTGGCACTTGCAGACATCCCTTCTCTTACTTCTGAAGATAAAGCTGAATTTGCATACCAAAAATTTGCACATGCATGGGTTTCCCTTTTGAGAGAAAGGGCCAGTAACAATTCCATAAACTTGGTCCTATGGTCCATAGCCCGAGTTTACATGAAAGAAAATATCTTCATAGACATTTGCGCATTTCTGAGGACATTTTGTGCTGTTGTTTCTCCTTTACTTATTTATGCTTTTGTAAACTATTCCAGTTGCAGTGAGGAAGACTTAAAACAAGGAATGGCCATAATGGGGTATCTTATATTAGCCAAGGTGGTTGAGTCTGTGTCTCAAAGACATTGGTCTTTTAATTCAAGGAGGTTAGGAATGAAAATGAGATCTGCTTTAATGGCTGCAGTGTATCAAAAGCAATTAAAGCTTTCAGCTTTGGGTAGGAAAAGACATTCAACTGGCGAGATTGTGAATTACATTGCAGTTGACGCATATCGAATGGGGGAATTTCCATGGTGGTTTCATACATTGTTGTTTTCTGCATTGCAACTTTTTCTGGCTCTTGGTGTCCTTTTTGGTGTTGTGGGTCTAGGTGCACTTCCTGGTTTGATGCCACTTCTCATTTGTGGATTTCTCAACGTACCCTTTGCAAAGATCCTTCAAAAACGTAGGTCGGAGTTTATGATTGCACAAGATGAGCGTCTGAGATCAACTTCAGAGATTCTTAGTTGTATGAAAATCATAAAGCTACAGTCCTGGGAGGATAACTTCAAGAAGCTAGTTGAATCCCTTCGCGCTAAAGAGTTAAAATGTTTGGCTGAAGTACAGTTCATGAGAGCTTGTGGAACATTTATATATTGGATGTCTCCCACCATCATTTCTTCAGTTATCTTAATGGGATGTGCGCTTTTCACGAGTGCCCCTTTGGATGCTGGAACTATTTTCACAGTTCTTGCAACACTGAGAAGCATGGGGGAACCTGTCATACTGATTCCAGAAGCACTTGCTGTAATGGAAGGAGGAAAAATTAGTCAATCGGGTAGCTATGAAGATCTGTTGACTGCTGGAACAGCCTTTGAACAGCTTTTGAGTGCTCATAGAGAGGCAATTGCAGGAATAGAAACAAATAGTGCAAACAAAAGAGAGGTTCAAAATGTGGTTACAGTTCAGCCTGAGGATTCTCATGTTTCTAATCTCACTAAACGTGGAAGTGAGGGGGAAATTTCTACCGAGATTCAACTTACACAAGAAGAAGAAAAGGAGAGTGGTGATATTGGGTGGCAGGCATTCTGTGACTATATTTTGTTCCCTAAGGGATCTTTTCTTCTATGTTTAAGCATATTAGCACAGTTGGCTTTTGTAGGTCTGCAAGCTGCATCAACTTCTTGGCTTGCTGTAGCCAATGAGATGTCAAAAGTAACTAGCAGCATCTTAGTTGGAGTTTATAGTGTGATTTCTTTCTTAAGCATTGTTTTTGTATTTCTGAGATCTTACTTTGCTGCACATCTTGGTTTAAAAGCTTCTAAAGCTTTCTTCTCTGCCTTCACTAATTCTATATTTAATGCTCCTATGTTGTTCTTTGATTCAACCCCAGTAGGGAGGATTTTGACCCGAGCTTCATCAGATATGAGTATTTTAGATTTCGATATCCCTTTTTCCACCATCTTTGTGACAGCTGAAGTAACAGAACTTCTTACAATGATTGTGATAATGGTTTCAATCACATGGCAAGTGCTCATTGTTGCAGTTCTTGCCATGGTGGCTTCAAAATATATTCAGGGCTATTATCAAGCTTCTGCAAGAGAAATTATACGAATCAGTGGAACTACAAAAGCTCCTCTTATGAATTTTACGGCTGAGACATATCTTGGTGTGGTTAGTATAAGAGCTTTCAACATGGCTGACAGGTTTTTCAAAAACTACCTTAACCTCGTCGACACAGATGCCGCTATGTTCTTTCATTCCTATGCTGGCATCGAATGGTTAATTCTAAGGATTGAAGTACTTCAGAATTTGACATTCTTCACTGCAGCTTTGCTGCTTGTTCTACTTCCAAAGGGATATGTGGCTCCTGGCCTTGTGGGACTTTCTCTGTCTTATGCTTTTTCACTGAGAGGAACCGTGGTTTATCTGACTCAAATGTTTTGCAACTTATCAAACTATGTGATCTCTGTTGAAAGAATCAAGCAATTCATCAACATACCAGCAGAGCCTAGTGCAATTGTAGAGGACAATAGACCCCCACCTTCTTGGCCTTCTAAAGGTCGAATAGATCTTCAATCTCTTGAGATTAGATATCGTCCAAATTCTCCATTAGTCCTGAAGGGCATCTCTTGCACGTTTAAAGAAGGGAGTAGAGTTGGAGTTGTAGGAAGAACAGGAAGTGGAAAAACTACACTTATAAGTGCTTTGTTTCGCTTAGTTGAGCCTACTAGAGGTGAAATTCTTATAGATGGGATTAATATATGCTCAATTGGGTTAAAAGATTTAAGAATAAAGCTAAGCATCATTCCTCAAGAACCAACTCTTTTCAAGGGTAGCATTCGAAATAACTTGGACCCTCTAGGCCTGTACTCTGATGATGAAATATGGAAGGCTTTAGAGAAATGTCAGCTCAAGGCAACAATCAGTAGTCTACCAAATCTCTTGGACACTTCTGTGAGTGGTGAAGGGGAAAACTGGAGTGTGGGGCAGCGCCAACTGATATGTCTTGGAAGGGTACTTCTTAAGAGGAGCAGAATTCTTGTTCTGGATGAAGCTACTGCCTCCATTGATTCTGCAACAGATGCTATTCTACAAGGAATCATCAGAGAAGAATTTTCAGAATGCACAGTTATAACTGTGGCTCACAGAGTTCCCACTGTAATAGACAGTGATATGGTCATGGTCCTATCTTATGGGAAACTGGTGGAGTATGACAAGCCTTCAAAGCTTATGGATACTAACTCTTCATTCTCCAAGCTGGTAGCTGAATATTGGTCCCACTGCAACAGGAATTTCTCCCCAAAAGACTAG 3699 0.4009 MACFGSTIDNFSCICLGDFSLASFSSQRCIIDIVNMFFLCVFYVSLLSNLIKKRPANASGNYRKGLVRVVTSFCCTILSIAYFMDGLWNVITKTSGFNQLNLLVCFVRGLVWISLAASLFVQRFQWIKKLCSIWWVFSCTLVSVLNAEILVKEHRFQIFDMAMWPVHILTVLCAFQNHGYFVPQEIPGASLCDPLLVHKEMHKQTGLGHASFLSRFTFSWMNALLSLGYSKPLALADIPSLTSEDKAEFAYQKFAHAWVSLLRERASNNSINLVLWSIARVYMKENIFIDICAFLRTFCAVVSPLLIYAFVNYSSCSEEDLKQGMAIMGYLILAKVVESVSQRHWSFNSRRLGMKMRSALMAAVYQKQLKLSALGRKRHSTGEIVNYIAVDAYRMGEFPWWFHTLLFSALQLFLALGVLFGVVGLGALPGLMPLLICGFLNVPFAKILQKRRSEFMIAQDERLRSTSEILSCMKIIKLQSWEDNFKKLVESLRAKELKCLAEVQFMRACGTFIYWMSPTIISSVILMGCALFTSAPLDAGTIFTVLATLRSMGEPVILIPEALAVMEGGKISQSGSYEDLLTAGTAFEQLLSAHREAIAGIETNSANKREVQNVVTVQPEDSHVSNLTKRGSEGEISTEIQLTQEEEKESGDIGWQAFCDYILFPKGSFLLCLSILAQLAFVGLQAASTSWLAVANEMSKVTSSILVGVYSVISFLSIVFVFLRSYFAAHLGLKASKAFFSAFTNSIFNAPMLFFDSTPVGRILTRASSDMSILDFDIPFSTIFVTAEVTELLTMIVIMVSITWQVLIVAVLAMVASKYIQGYYQASAREIIRISGTTKAPLMNFTAETYLGVVSIRAFNMADRFFKNYLNLVDTDAAMFFHSYAGIEWLILRIEVLQNLTFFTAALLLVLLPKGYVAPGLVGLSLSYAFSLRGTVVYLTQMFCNLSNYVISVERIKQFINIPAEPSAIVEDNRPPPSWPSKGRIDLQSLEIRYRPNSPLVLKGISCTFKEGSRVGVVGRTGSGKTTLISALFRLVEPTRGEILIDGINICSIGLKDLRIKLSIIPQEPTLFKGSIRNNLDPLGLYSDDEIWKALEKCQLKATISSLPNLLDTSVSGEGENWSVGQRQLICLGRVLLKRSRILVLDEATASIDSATDAILQGIIREEFSECTVITVAHRVPTVIDSDMVMVLSYGKLVEYDKPSKLMDTNSSFSKLVAEYWSHCNRNFSPKD* 1233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01870 1232 Pfam ABC transporter transmembrane region 291 548 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phac10g01870 1232 Pfam ABC transporter transmembrane region 673 932 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phac10g01870 1232 FunFam ABC transporter C family member 3 968 1219 - -
Phac10g01870 1232 Gene3D - 968 1219 IPR027417 -
Phac10g01870 1232 Gene3D ABC transporter type 1, transmembrane domain 639 966 IPR036640 GO:0005524|GO:0016020
Phac10g01870 1232 SUPERFAMILY ABC transporter transmembrane region 275 569 IPR036640 GO:0005524|GO:0016020
Phac10g01870 1232 FunFam ABC transporter C family member 10 270 575 - -
Phac10g01870 1232 Coils Coil 478 498 - -
Phac10g01870 1232 CDD ABC_6TM_ABCC_D1 291 572 IPR044746 GO:0140359
Phac10g01870 1232 CDD ABCC_MRP_domain2 983 1203 - -
Phac10g01870 1232 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 667 948 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phac10g01870 1232 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 987 1219 IPR003439 GO:0005524
Phac10g01870 1232 Gene3D ABC transporter type 1, transmembrane domain 274 574 IPR036640 GO:0005524|GO:0016020
Phac10g01870 1232 FunFam ABC transporter C family member 5 635 966 - -
Phac10g01870 1232 Pfam ABC transporter 1002 1150 IPR003439 GO:0005524
Phac10g01870 1232 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 291 568 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phac10g01870 1232 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 974 1218 IPR027417 -
Phac10g01870 1232 CDD ABC_6TM_ABCC_D2 667 960 IPR044726 GO:0140359
Phac10g01870 1232 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 564 1217 - -
Phac10g01870 1232 SUPERFAMILY ABC transporter transmembrane region 663 965 IPR036640 GO:0005524|GO:0016020
Phac10g01870 1232 SMART AAA_5 1011 1204 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01870 Phac-Chr10 41159375 41164422 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01870 983 1217 Calmodulin-binding Proteins AT2G36910 32.780 1.62e-30 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01870 - - gmx:100813711 1139.41