Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01862 ATGATGACAATGATCTTTAATGGGTACGCAGATGATTTCTCATGGATTTGTCTGAAGGATTTTGAGTTCACTTCTTTCTGTTCCCAAAGAACCACAATAGACACAATAAATCTACTTTTCGTCTGTGTTTTCTACGCTTCTACGATTGTCAGTTTAATCAGAAGAAATGTTATCAATGGAAGTCATAGCAGAAGCAAGTTTTTCCTTATTGTCTCTATCTGTTGTGCTATCACTAGCATCGTGTTTTACAGTATTCGCTTGTGGAATCTCATTGCCAAAACCGGTAACTCCATGGCTAACTTAGCATGCATCGTAAGAGGATTTGTTTGGACTTCTTTGGCAGTTTCTTTGCTTGTTCAGAGACACAAATGGATCAAAATCCTAAACTTTCTGTGGTGGGCATGTTCCTGTGCTCTAGTTTCAGCTCTCAACATTGAAATTCTGTTCAGAAAGCATGCAATAGAATTTTTCGATGTCCTACTATGGCTCTTGCACACACTTCTTCTCTTCTGTGCCTTCCAAAATCTTGGTTACTTTGTCACTCAAAGTGTGTCAAAAAGTTTGTCTGAGCCATTGTTAGCTCAGGAATTTGACACAGAAGAAACAGGACTAGGCTGTGCTTCCTTTCTGAGAAAGTTGACCTTCTCTTGGGTTAACTCCTTACTCAGTCTGGGTTACTCAAAGCCACTATCTCTTGAAGACATCCCTTCCCTTCTTTCCGAAGATAAAGCAGACTTCTCCCACCAAAACTTCATGCATGCATGGGAATCCCTTGTGTGTGAGAGAAACAAGAACAATACCAAGAACTTGGTGCTTTGGTCCATTGTTAGAACTCACTTAAAAGAGAACGTATTAATAGCTTTTTATGCATTACTCAGAACCATTGCTGTGGCTGTTTCTCCTTTAATACTCTATGTTTTTGTCAACTTTTCAAATGGTAGGCATAGTGACGATACAGATCTCAAAGAAGGTCTTACCATAGTGGGTTTTCTTATTCTCTCCAGAGTGGTTGATTCTGTGTCTCAGAGACATTGGTTTTTTCATTCCAGGAGATCAGGATTGAAGATGAGATCAGCTCTGATGGTGGCAGTGTATGAAAAACAACTAAAGCTTTCAAGCTCAGCAAGGACAAGACACTCCACAGGTGAAATTGTGAATTACATTGCAGTTGATGCATATCGCATGGGAGAATTTCCATGGTGGTTTCACATAACATGGGCATGTACATTGCAAATTCTCCTATCTATAGGTATCCTTTATGGAGTTGTGGGAGTTGGTGCTCTTCCTGGTTTAGTCCCTCTTCTTATATGTGGACTTCTCAATGTACCATTTGCCAAGATCCTACAAAAATGCATGGCAGAGTTCATGATTTCACAGGATGAGCGTCTTAGAGCAACTTCAGAAATTCTAAACAGCATGAAAATCATTAAGTTACAGTCCTGGGAAGACAAATTCAAGAGTTTGGTTGAGAACCTACGTGGGAAAGAGTTCCTTTGGCTATCTAAGGCACAGATCATGAAAACTTATGGCACATTTTTGTACTGGATGTCTCCTACCATCGTTTCTGCTGTTGTTTTCCTGGGTTGTGCTGCTTTCAATAGTGCTCCATTAAATGCTGGGACCATTTTTACAGTTCTTGCAACGTTGAGGAACCTGGCAGAACCTGTTCGAATGATTCCGGAGGCTCTATCTATTATGATCCAAGTTCAGGTATCTTTTGATCGTCTCAATACCTTTTTGCTTGATGAAGAACTAGATACCAGTGATGATAACAAAAGACATATAAACCGAAGTTCATTGAATGCGGTAGAAATCCAAGGTGGCAACTTCATTTGGGACCATGAATCAGTGTCTCCAACTTTAAGAGATGTGAATTTAGAAATCAAATGGGGACAGAAAGTTGCAGTTTGTGGGCCAGTTGGAGCTGGAAAATCATCCCTTTTGTATGCAGTACTGGGAGAGATTCCCAAGATCTCAGGAACTGTTAATGTGTCCAGCAACATAGCATATGTTTCTCAAACCTCTTGGATACAAAGTGGGACGGTTCAAGATAATATACTCTTTGGCAAGCCGATGGAAAAAACAAGATATGAGAGTGCCATTAAAGTTTGTGCTTTGGATAAAGATATCAAGGATTTTAGCCACGGTGATCTTACAGAAATAGGGCAGCGAGGGATTAACATGAGTGGAGGACAAAAGCAAAGGATTCAGCTGGCTCGTGCTGTCTACAATGATGCTGACATTTACCTCCTCGATGACCCTTTCAGTGCAGTTGATGCTCACACTGCTGCTATCCTTTTCAAAGACTGCGTAATGACGGCTCTAAGAGAGAAAACAGTCATTCTAGTGACACATCAAGTGGAGTTTCTCTCAGAAGTTGATGCAATCCTGAATCTCTTAACAGCTGGGACTTCCTTTGAACAACTTGTGAGCGCGCATAAGGAAGCAATTACAGAGTTGGATCAGAATAATGAGAACAAAACTCAGAGAGAAGATTCTGAAGGTGTTTATCTACCTAAAAATCAAAGTGAGGGGGAGATTTCTACCGAGGGTCAACATGGGATACAGCTTACACAAGAAGAAGAAAAAGAGATTGGTGATGTTGGCTTGAAGACATTATGGGATTATATTTCATTTTCCAGGGGTTCATTGATGCTGTCATGGATACTGTTGGCACAATTTGCTTTTATTGCTTTGCAGACTGCATCAATGGTTTGGCTTGCTTTATCCATTGATATTCCAAAAATAACTAGTGCCACCTTGATTGGGGTTTACTCTATAATCTCATTTGCTAGTGTTGGGTTTATGTATGTAAGGTCTCTCTTGACCTCTTACCTCGGATTAAAAGCTTCTAAAGCTTTCTTCACAAGTTTCAATACTGCTATCTTCAATGCTCCCATGCTGTTCTTTGACTCAACTCCTGTAGGAAGGATTTTAACGAGAGCTTCATCAGATTTAAGTATTTTGGACTTTGATATACCCTATTCGATCACCTTTGTAGCATCTGTAGCAATTGAAATTTTGGTGATGATTTGTGTAATGGTTTTTGTAACATGGCCAGTTCTCATTGTTGCCATTCCTGCAATAGTTGCATCAAAATATGTACAGGGGTATTATCAAGCCTCGTCAAGGGAGTTGATGAGGATCAATGGAACCACAAAAGCTCCTGTGATGAATTTTGCAGCTGAGACATCACATGGTGTGGTTACTGTGAGAGCATTTAATATGGTAGAAAGATTTTTTAAGACTTACTTAAAGCTTGTGGACACAGACGCAACACTGTTTTTCCATTCTAATGTGGCCATGGAATGGTTACTTTTAAGGATTGAAGCACTTCAAAATTTGACAGTCATCACTTCAGCTTTGCTACTTATTCTATTTCCTCAGGGATACGTGTCCACGGGCCTTGTGGGACTATCTCTCTCTTATGCTTTAAGCTTCACAGCAGCCTACACATTTTGGACAAGATGGTATTGCAATTTATTAAACTATGTTATATCTGTTGAAAGAATCAAGCAATTCATTCACCTACCATCAGAGCCTCCTGCCATTGTGAAGGACCACCGACCTCCATCTTCATGGCCTTCCAAAGGCAGGATTGACCTTCAAGCCTTAGAGATTAGATATCGTCCTAATGCTCCATTAGTACTTAAGGGTATCACTTGTATGTTTAGAGAAGGGAGTAGAGTGGGAGTTGTGGGAAGAACCGGAAGTGGAAAAAGTACACTCATAAGTGCTTTGTTTCGCTTAGTTGAGCCAGCAAGGGGTGATATTCTTATAGATGGGATTAGCATATGCTCCATGGGGTTGAAGGATTTGAGAATGAAACTAAGCATCATCCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGAACCAACTTGGACCCTTTAGGCCTGTACTCAGATGATGAGATATGGAAGGCTTTGGAGAAATGCCAGCTTAAGGAAACTATCAGCAATCTACCAAATCTCTTAGACTCTTTGGGAAGAGTACTGCTTAAGAGGAACAGAATTCTTGTTCTGGATGAAGCTACTGCCTCCATTGATTCTGCCACTGATGCAATTCTACAAAGAATTATCAGACAAGAGTTTGCAGAATGCACAGTTATAACAGTGGCTCACAGGGTTCCAACTGTAATAGACAGTGACATGGTTATGGTCCTCTCCTTTGGGAAAGTGGTGGAATATGATGAACCTTTAAGATTAATGGACACCAACTCTTCATTCTCTAAGCTGGTAGCTGAATATTGGGCCAGCTGCAGCAAGAATTCCTCCTAA 4281 0.4048 MMTMIFNGYADDFSWICLKDFEFTSFCSQRTTIDTINLLFVCVFYASTIVSLIRRNVINGSHSRSKFFLIVSICCAITSIVFYSIRLWNLIAKTGNSMANLACIVRGFVWTSLAVSLLVQRHKWIKILNFLWWACSCALVSALNIEILFRKHAIEFFDVLLWLLHTLLLFCAFQNLGYFVTQSVSKSLSEPLLAQEFDTEETGLGCASFLRKLTFSWVNSLLSLGYSKPLSLEDIPSLLSEDKADFSHQNFMHAWESLVCERNKNNTKNLVLWSIVRTHLKENVLIAFYALLRTIAVAVSPLILYVFVNFSNGRHSDDTDLKEGLTIVGFLILSRVVDSVSQRHWFFHSRRSGLKMRSALMVAVYEKQLKLSSSARTRHSTGEIVNYIAVDAYRMGEFPWWFHITWACTLQILLSIGILYGVVGVGALPGLVPLLICGLLNVPFAKILQKCMAEFMISQDERLRATSEILNSMKIIKLQSWEDKFKSLVENLRGKEFLWLSKAQIMKTYGTFLYWMSPTIVSAVVFLGCAAFNSAPLNAGTIFTVLATLRNLAEPVRMIPEALSIMIQVQVSFDRLNTFLLDEELDTSDDNKRHINRSSLNAVEIQGGNFIWDHESVSPTLRDVNLEIKWGQKVAVCGPVGAGKSSLLYAVLGEIPKISGTVNVSSNIAYVSQTSWIQSGTVQDNILFGKPMEKTRYESAIKVCALDKDIKDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFKDCVMTALREKTVILVTHQVEFLSEVDAILNLLTAGTSFEQLVSAHKEAITELDQNNENKTQREDSEGVYLPKNQSEGEISTEGQHGIQLTQEEEKEIGDVGLKTLWDYISFSRGSLMLSWILLAQFAFIALQTASMVWLALSIDIPKITSATLIGVYSIISFASVGFMYVRSLLTSYLGLKASKAFFTSFNTAIFNAPMLFFDSTPVGRILTRASSDLSILDFDIPYSITFVASVAIEILVMICVMVFVTWPVLIVAIPAIVASKYVQGYYQASSRELMRINGTTKAPVMNFAAETSHGVVTVRAFNMVERFFKTYLKLVDTDATLFFHSNVAMEWLLLRIEALQNLTVITSALLLILFPQGYVSTGLVGLSLSYALSFTAAYTFWTRWYCNLLNYVISVERIKQFIHLPSEPPAIVKDHRPPSSWPSKGRIDLQALEIRYRPNAPLVLKGITCMFREGSRVGVVGRTGSGKSTLISALFRLVEPARGDILIDGISICSMGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKALEKCQLKETISNLPNLLDSLGRVLLKRNRILVLDEATASIDSATDAILQRIIRQEFAECTVITVAHRVPTVIDSDMVMVLSFGKVVEYDEPLRLMDTNSSFSKLVAEYWASCSKNSS* 1427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01862 1426 SUPERFAMILY ABC transporter transmembrane region 873 1182 IPR036640 GO:0005524|GO:0016020
Phac10g01862 1426 FunFam ABC transporter (MsbA subfamily) 1186 1415 - -
Phac10g01862 1426 ProSitePatterns ABC transporters family signature. 728 742 IPR017871 GO:0005524|GO:0016887
Phac10g01862 1426 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 888 1150 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phac10g01862 1426 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 207 1418 - -
Phac10g01862 1426 FunFam ABC transporter C family member 10 267 584 - -
Phac10g01862 1426 Gene3D ABC transporter type 1, transmembrane domain 261 584 IPR036640 GO:0005524|GO:0016020
Phac10g01862 1426 Gene3D ABC transporter type 1, transmembrane domain 851 1181 IPR036640 GO:0005524|GO:0016020
Phac10g01862 1426 SUPERFAMILY ABC transporter transmembrane region 272 584 IPR036640 GO:0005524|GO:0016020
Phac10g01862 1426 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 605 826 IPR003439 GO:0005524
Phac10g01862 1426 CDD ABCC_MRP_domain2 1198 1400 - -
Phac10g01862 1426 Gene3D - 1183 1416 IPR027417 -
Phac10g01862 1426 SMART AAA_5 1226 1401 IPR003593 GO:0016887
Phac10g01862 1426 SMART AAA_5 630 803 IPR003593 GO:0016887
Phac10g01862 1426 CDD ABCC_MRP_domain1 603 797 - -
Phac10g01862 1426 Gene3D - 610 850 IPR027417 -
Phac10g01862 1426 Pfam ABC transporter transmembrane region 916 1147 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phac10g01862 1426 Pfam ABC transporter transmembrane region 285 547 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phac10g01862 1426 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1202 1416 IPR003439 GO:0005524
Phac10g01862 1426 Pfam ABC transporter 621 755 IPR003439 GO:0005524
Phac10g01862 1426 Pfam ABC transporter 1217 1347 IPR003439 GO:0005524
Phac10g01862 1426 FunFam Multidrug resistance protein associated1 581 832 - -
Phac10g01862 1426 FunFam ABC transporter C family member 5 849 1181 - -
Phac10g01862 1426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1190 1415 IPR027417 -
Phac10g01862 1426 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 284 568 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phac10g01862 1426 Coils Coil 810 830 - -
Phac10g01862 1426 CDD ABC_6TM_ABCC_D2 882 1175 IPR044726 GO:0140359
Phac10g01862 1426 CDD ABC_6TM_ABCC_D1 285 576 IPR044746 GO:0140359
Phac10g01862 1426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 600 799 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01862 Phac-Chr10 41090150 41096365 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01862 590 815 Calmodulin-binding Proteins AT2G36910 26.908 2.28e-16 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01862 - - gmx:100784827 2356.64