Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01847 ATGAGCCGCTACGACAGCCGCTCCGGTGACCCTACTTCCTACCGTGACCGGAGGAGTGATTCTGGCCTAGGTGCATCTACAGGGTTTGGTGGTTCTGTACAACACTCTTCATCAAACAGGAGGGATCATGATGATGGTGGGTCACCAAAGAGGAATCTCAGTTTGGATGGTTTACCTCATTTCGAGAAAAACTTCTACATTGAGTCACCTGCAGTAAGGGCAATGACAGATGCTGAGGTTAATGAGTACCGGCAGCAGAGGGAAATAACTGTTGAAGGTCGAGATATCCCCAAGCCTGTCAAAACCTTTCAAGATGCTGGTTTTCCAGAATACGTGTTGCAAGAAATTACAAAAGCTGGCTTTACTGAACCTACACCCATTCAATCTCAAGGTTGGCCCATGGCTTTGAAGGGGCGTGATCTGATAGGAATAGCAGAAACAGGTTCAGGGAAGACACTTGCTTACTTGTTACCTGCCATTGTGCATGTTAATGCTCAGCCGATTCTAGATCCTGGAGATGGACCTATTGTGTTAGTATTGGCTCCAACTCGTGAACTTGCTGTTCAAATACAACAAGAAGCTACTAAATTTGGTGCATCGTCTAGGATTAAGAGTACATGTATCTATGGTGGGGTTCCGAAGGGACCTCAGGTGCGTGATCTCCAGAAAGGTGTCGAAATTGTAATTGCCACTCCCGGAAGGTTAATTGATATGCTTGAATCAAATCATACGAACTTGCAGAGGGTCACATATCTTGTATTGGATGAAGCTGATAGGATGTTGGATATGGGGTTTGATCCTCAGCTGCGGAAGATTGTTTCTCAGATTCGGCCGGACCGTCAAACTTTGTATTGGAGTGCTACCTGGCCGAAGGAGGTCGAACAATTGGCACGGAAGTTCCTTTATAACCCATACAAAGTAATTATAGGGTCTGAAGATTTAAAAGCTAACCATGCAATACGTCAATATGTTGACATTGTTTCAGAAAAGCAGAAATATGATAAATTGGTGAAGTTGCTAGAGGACATCATGGATGGCAGCCGAATACTGATATTCATGGATACCAAAAAAGGATGTGATCAGATCACTAGGCAACTCCGCATGGATGGCTGGCCTGCACTTTCAATTCATGGAGACAAAAGTCAAGCAGAAAGAGATTGGGTTCTCTCAGAATTTAAATCGGGAAAAAGTCCTATTATGACTGCAACAGATGTTGCAGCCCGTGGTTTAGATGTGAAGGATGTGAAATATGTAATAAATTATGACTTCCCGGGGTCACTTGAGGACTATGTCCATCGCATTGGGCGGACTGGAAGAGCTGGTGCAAAAGGAACTGCCTACACATTCTTCACAGCTGCAAATGCTAGATTTGCAAAGGAACTTATCGCCATACTTGAGGAAGCTGGACAGAAAGTGAGTCCTGAATTAGCAGCAATGGGGCGTGGTGCACCACCTCTGCCTTCAGGTCCCCGAGGTTTCCAAGACCGTGGGAGGGGTTATGGCAGTTCTCGTCCATGGAGCTAA 1524 0.4541 MSRYDSRSGDPTSYRDRRSDSGLGASTGFGGSVQHSSSNRRDHDDGGSPKRNLSLDGLPHFEKNFYIESPAVRAMTDAEVNEYRQQREITVEGRDIPKPVKTFQDAGFPEYVLQEITKAGFTEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLQRVTYLVLDEADRMLDMGFDPQLRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYNPYKVIIGSEDLKANHAIRQYVDIVSEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIAILEEAGQKVSPELAAMGRGAPPLPSGPRGFQDRGRGYGSSRPWS* 508
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01847 507 CDD SF2_C_DEAD 320 450 - -
Phac10g01847 507 FunFam ATP-dependent RNA helicase RhlB 311 483 - -
Phac10g01847 507 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 78 479 - -
Phac10g01847 507 MobiDBLite consensus disorder prediction 1 17 - -
Phac10g01847 507 Gene3D - 64 310 IPR027417 -
Phac10g01847 507 MobiDBLite consensus disorder prediction 477 507 - -
Phac10g01847 507 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 253 261 IPR000629 -
Phac10g01847 507 CDD DEADc_DDX5_DDX17 112 307 - -
Phac10g01847 507 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 101 129 IPR014014 GO:0003724
Phac10g01847 507 SMART helicmild6 360 441 IPR001650 -
Phac10g01847 507 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 132 307 IPR014001 -
Phac10g01847 507 Gene3D - 311 481 IPR027417 -
Phac10g01847 507 MobiDBLite consensus disorder prediction 1 56 - -
Phac10g01847 507 FunFam probable ATP-dependent RNA helicase DDX17 63 310 - -
Phac10g01847 507 Pfam DEAD/DEAH box helicase 125 296 IPR011545 GO:0003676|GO:0005524
Phac10g01847 507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 456 IPR027417 -
Phac10g01847 507 Pfam Helicase conserved C-terminal domain 332 441 IPR001650 -
Phac10g01847 507 SMART ultradead3 120 323 IPR014001 -
Phac10g01847 507 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 335 480 IPR001650 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Phac10g01847 Phac-Chr10 41001076 41009754 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01847 88 461 Eukaryotic Initiation Factors Gene Family AT3G19760 34.133 2.58e-77 246
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01847 K12823 - gmx:100781619 993.03