Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01798 ATGGGGAATCAGAAGCAGAAGTGGACGCAGGACGAAGAAGACGCGCTCATCGCCGGAGTTGAAAAGCACGGTCCCGGAAAATGGAAGAACATTCTCAAAGATCCCCAATTCGCCCCTTTTCTCACTTCCCGTTCCAACATCGACCTCAAGGACAAATGGCGGAATTTGAGCGTAAGTAACGGTTCTCAAGGCTCTAAAGACAAACCTAGGGTTCCTAAGCTCAAGGCTCTTCCTGCTCCTCCTTCTGCTACTGCCTCCTCCACCACCACCACCACTCCTCAAAACGCGGCTTCTGCTCTTCAAAACGCACAGTCTGATGTCGCTGTCCCTGATTCTTCTCTGAATGACCAAGATGTCAAAAACCCTCCGAGGTATAATGCAATGGTTTTTGAAGCTCTATCAGCACTAAAAGATAATAATGGATCGGACCTAAATGCCATTGTTACTTTCATCGAGCAAAAACATCAGGTTCCTCAAAATTTTAGAAGGGCATTAAGTACAAGGTTGAGGAGGCTTGTTAGCCAAGGGAAACTTGAAAAGGTACAAAATTGTTACAAAATAAAAAAGGATGTCCCCTCAGGAACAAAATCACCTTTACCAAGACCAAAGGATGTCCGACCAGCATCATCACAACCACAACCACAACCACAATGGCAATCCTCAGCTTCTGTCTTTACAACATCTAATGAGACAGTAAAGGAAGCTGCAGATACTGCAGCCTACAGAATTGCCGATGCTGAAAGTAAATCATATCTGGCTGCGGAAGCAGTAAAGGAGGCAGAAAAAATATCATTGCTGGTTCTCGTGGTGAAATTATCCTTTTGGCTTAAGATGGTCAACGAAAGAGAATCGGAAGAGAGTGATGGTTTCAACTTTCAAGAAGTGTTTGGTCCTAATTCAAAGCAGAAGTGGACGCAGGACGAAGAAGACGCGCTTATCGCCGGAGTTGAAAAGCACGGTCCCGGAAAATGGAAGAACATTCTCAAAGATCCCCAATTCGCCCCTTTTCTCACTTCCCGTTCCAACATCGACCTCAAGGACAAATGGCGGAATTTGAGCGTAAGTAACGGTTCTCAAGGCTCTAAAGACAAACCTAGGGTTCCTAAGCTCAAGGCTCTTCCTGCTCCTCCTTCTGCTACCACCTCCTCCACCACAACCGCCACCTCTCAAAACGCCGCTCCTGCTCCTCAAAACCGGCCTTCTGATGTCGCTGTCCCTGATTCTTCTCCGAATGACCAAGATGTCAAAAACCCTCCGAGGTACAATGCAATGGTTTTTGAAGCTCTATCAGCACTAAAAGATAATAATGGATCGGACCTAAATGCCATTGTTACTTTCATCGAGCAAAAACATCAGGTTCCTCAAAATTTTAGAAGGGCATTAAGTACAAGGTTGAGGAGGCTTGTTAGTCAAGGGAAACTTGAAAAGGTACAAAATTGTTACAAAATAAAAAAAGATGTCTCCTCAGGGACAAAATCACCTCCACCAAAACCAAAGGATGTTCGGCCACTGCAGCTACAACCACAACGGCAACCCCCAACTTCTGTCTTTACGGCATCTAACGCCACAGTAAAGGAAGCTGCAGATACTGCAGCTTACAGAGTTGCTGATGCTGAAAGTAAATCATATCTGGCTGCAGAAGCAATAAAGGAGGCAGAAAAAATATCATTGCTGGTTCCCGTGGTGAAATTATCCTCTTGGCCTAAGATGGTTAACGGAAAAGGTCTATAA 1731 0.4512 MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGSQGSKDKPRVPKLKALPAPPSATASSTTTTTPQNAASALQNAQSDVAVPDSSLNDQDVKNPPRYNAMVFEALSALKDNNGSDLNAIVTFIEQKHQVPQNFRRALSTRLRRLVSQGKLEKVQNCYKIKKDVPSGTKSPLPRPKDVRPASSQPQPQPQWQSSASVFTTSNETVKEAADTAAYRIADAESKSYLAAEAVKEAEKISLLVLVVKLSFWLKMVNERESEESDGFNFQEVFGPNSKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGSQGSKDKPRVPKLKALPAPPSATTSSTTTATSQNAAPAPQNRPSDVAVPDSSPNDQDVKNPPRYNAMVFEALSALKDNNGSDLNAIVTFIEQKHQVPQNFRRALSTRLRRLVSQGKLEKVQNCYKIKKDVSSGTKSPPPKPKDVRPLQLQPQRQPPTSVFTASNATVKEAADTAAYRVADAESKSYLAAEAIKEAEKISLLVPVVKLSSWPKMVNGKGL* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01798 576 MobiDBLite consensus disorder prediction 354 419 - -
Phac10g01798 576 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Phac10g01798 576 CDD H15 419 503 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phac10g01798 576 MobiDBLite consensus disorder prediction 55 122 - -
Phac10g01798 576 ProSiteProfiles Myb-like domain profile. 301 353 IPR001005 -
Phac10g01798 576 FunFam Telomere repeat-binding factor 1 304 383 - -
Phac10g01798 576 CDD SANT_TRF 302 352 - -
Phac10g01798 576 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Phac10g01798 576 Gene3D - 118 200 IPR036388 -
Phac10g01798 576 Gene3D - 414 502 IPR036388 -
Phac10g01798 576 Gene3D - 298 354 - -
Phac10g01798 576 Gene3D - 2 58 - -
Phac10g01798 576 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 417 485 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phac10g01798 576 MobiDBLite consensus disorder prediction 376 416 - -
Phac10g01798 576 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 62 IPR017930 -
Phac10g01798 576 MobiDBLite consensus disorder prediction 189 224 - -
Phac10g01798 576 MobiDBLite consensus disorder prediction 485 516 - -
Phac10g01798 576 CDD SANT_TRF 6 56 - -
Phac10g01798 576 SMART h15plus2 415 480 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phac10g01798 576 SMART h15plus2 119 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phac10g01798 576 PANTHER SINGLE MYB HISTONE 4 1 265 IPR044597 GO:0003691
Phac10g01798 576 SUPERFAMILY Homeodomain-like 300 354 IPR009057 -
Phac10g01798 576 SMART sant 4 59 IPR001005 -
Phac10g01798 576 SMART sant 300 355 IPR001005 -
Phac10g01798 576 Pfam Myb-like DNA-binding domain 301 352 IPR001005 -
Phac10g01798 576 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Phac10g01798 576 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 121 189 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phac10g01798 576 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 301 358 IPR017930 -
Phac10g01798 576 CDD H15 123 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phac10g01798 576 SUPERFAMILY "Winged helix" DNA-binding domain 417 497 IPR036390 -
Phac10g01798 576 FunFam Telomere repeat-binding factor 1 2 58 - -
Phac10g01798 576 SUPERFAMILY "Winged helix" DNA-binding domain 121 199 IPR036390 -
Phac10g01798 576 MobiDBLite consensus disorder prediction 208 224 - -
Phac10g01798 576 Pfam linker histone H1 and H5 family 419 478 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phac10g01798 576 Pfam linker histone H1 and H5 family 123 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phac10g01798 576 MobiDBLite consensus disorder prediction 81 120 - -
Phac10g01798 576 FunFam Telomere repeat-binding factor 1 8 87 - -
Phac10g01798 576 FunFam Telomere repeat-binding factor 1 298 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01798 Phac-Chr10 40704317 40712929 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01798 299 556 Single Myb Histone (SMH) Gene Family AT1G72740 48.837 1.96e-67 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phac10g01798 Linker_histone 7.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01798 K09422 - gmx:778177 372.474