Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01780 ATGTCTGCCACCCAAGCTCCGTCAACATCCCTTGTGGTCGGAAAAGACAGCACCGTGATCGCAGTTAGTGGAGGTCGACATAGCAATGGTGCTGTCAAATGGGCTGTGGAACACCTCCTAAAGAAGAACTCCTCATGCATCCTTCTTCATGTTCGAACTAGGACCATGCTTACTCCTGAAATTAGTGATGTACCAAAAAATGGTCGTCCACCAAATGAAGAAGAATTGCACCAATTTTTTCTTCCCTTCAGAGGATTTTGTGCTAGAAAAGGGATCACAACAAAGGAATTGGTCTTGCACGATCTTGATGTTGCAAATGCACTTATTGCTTTCGTTGTTGAAAATTGTATAAGCACCCTTGTTGTTGGTGCTGCTACTTCTTCTTGGGGTTCTCTATTAAGGAGATTTAACAAAGATGATGTATCAGCTAGTTTAGCAAAATTTTTACCAGATACTTGCAGTTTATATGTTATATCAAAAGGAAAAGTGCAACATATAAGACCATCAGGTCATCATGCTCATCATCATCGTCAACAACATGTTGAAGCCACACCAACTAAATCTTTAAAAGACATAGTCAATCTTTTTGAAAATGATCCATTGGTTCAACCACACAAGAATCCCACTAATAACCAAGCATCTTTTGAAGATACAGAGAGGAAACTAAGCAAAGATTCAACTAAGCACCAGTCTAATAGACTTTGGGAATATTTAAATGAAATTAATGATGCCACGCTAACAATACATTATAAGTCCAATGAAGATATCAATTCACCAAAAGGTCCAATTGATTATCCCCCATCACAAGCTTCATCTGCCAACAATTCTCCTGGAAATAGTGATAGCACAGGGCAATCCCTTGGTCTTCCTTTGACTAATAACTCAAATCCTAAGAACATTTCTTCTGTAAAAGAACAAGTAAACTTTGATATGCAAATGAGGAAATTGAAATTAGAACTAGAAAAAACTACGGAGAAGTATGGTATGGCTTGCAAAGAAGCTGTTCTAGCTACACAAAAGGCAATGGAGCTGGAAAAGTTTAGACAAGAAAAGGAACGTGACATAGAGGAAGTAAAACTTGCTCAAGTGTCTGCATTGGCTTTGGCAGAGGTAGAGAGACAAAAAACTAAAATGGCTATAGAGTCAACAGAAAGGTCAAAACACCTAGCAAGAATGGAGACTCAGAAGAGAAAGGAAATTGAATTAAAAGTCAAACACGAAGAAGAAGAGACTGCTAAAGCATTGCATGAAGTTATATATAATAATATTCCCTATAGAAAATACACAATTGAAGATATTGAAGTTGCAACAAATAAATTCGACAGTACTTTGAAAATTGGTGAAGGTGGATATGGACCTGTCTTTAAAGGAGTGCTTGATCACACTGTTGTTGCTATTAAGGCCATGAGACCAGATCTAACTTATGCAGAAAAACAATTTCAACAAGAGGTAATTGTTTTAAGCACCATAAGACATCCAAACATGGTGCTTCTCTTAGGAGCATGTCCAGAATTTGGTTGCCTTGTATATGATTACATGGTAAATGGAAGCTTAGAAGACCGTCTATTCCGAAAAGATAACACTCCTCCAATTCCATGGAAAACACGTTTCAAAATAGCATCTGAGATTGCCACTGGCCTTCTTTTTCTTCATCAAACAAAGCCTGAACCCCTGGTGCATCGAGACTTGAAACCAGCAAACATTCTTTTAGACAAGAACTATGTGAGCAAGATCAGTGATGTTGGTTTGGCACGACTTGTTCCTCCTTCTGTGGCTAATCAAACCACACAATATCGTCTAACTGGTGCAGCTGGAACATTCTGTTACATCGACCCTGAGTATCAACAAACAGGATTGTTGGGTGTGAAATCAGACATATATTCATTAGGAGTGGTGCTGCTACAGATCATTACAGGAAAATCTCCAATGGGGTTGTCACACTTGGTTGAGAAAGCTCTTTTGTCAAATACTTTATCTGAGGTGCTTGATCAAAGTGTTACTGATTGGCCAATGGAAGAGACTTCATCGTTTGCCAAGTTGGCCTTAAAGTGTTGTGAGTTGAGAAAACGTGATAGACCAGATCTTGGTACCATTGTCTTACCTGAATTAAATAGAATATGGAGTTTATGGGATGATGAGAACAAACATCCCCTTTCTTAA 2160 0.3847 MSATQAPSTSLVVGKDSTVIAVSGGRHSNGAVKWAVEHLLKKNSSCILLHVRTRTMLTPEISDVPKNGRPPNEEELHQFFLPFRGFCARKGITTKELVLHDLDVANALIAFVVENCISTLVVGAATSSWGSLLRRFNKDDVSASLAKFLPDTCSLYVISKGKVQHIRPSGHHAHHHRQQHVEATPTKSLKDIVNLFENDPLVQPHKNPTNNQASFEDTERKLSKDSTKHQSNRLWEYLNEINDATLTIHYKSNEDINSPKGPIDYPPSQASSANNSPGNSDSTGQSLGLPLTNNSNPKNISSVKEQVNFDMQMRKLKLELEKTTEKYGMACKEAVLATQKAMELEKFRQEKERDIEEVKLAQVSALALAEVERQKTKMAIESTERSKHLARMETQKRKEIELKVKHEEEETAKALHEVIYNNIPYRKYTIEDIEVATNKFDSTLKIGEGGYGPVFKGVLDHTVVAIKAMRPDLTYAEKQFQQEVIVLSTIRHPNMVLLLGACPEFGCLVYDYMVNGSLEDRLFRKDNTPPIPWKTRFKIASEIATGLLFLHQTKPEPLVHRDLKPANILLDKNYVSKISDVGLARLVPPSVANQTTQYRLTGAAGTFCYIDPEYQQTGLLGVKSDIYSLGVVLLQIITGKSPMGLSHLVEKALLSNTLSEVLDQSVTDWPMEETSSFAKLALKCCELRKRDRPDLGTIVLPELNRIWSLWDDENKHPLS* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01780 719 SUPERFAMILY Protein kinase-like (PK-like) 418 699 IPR011009 -
Phac10g01780 719 SMART serkin_6 440 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac10g01780 719 ProSitePatterns Serine/Threonine protein kinases active-site signature. 558 570 IPR008271 GO:0004672|GO:0006468
Phac10g01780 719 PANTHER OS02G0152300 PROTEIN 19 706 - -
Phac10g01780 719 Pfam Protein tyrosine and serine/threonine kinase 445 699 IPR001245 GO:0004672|GO:0006468
Phac10g01780 719 ProSiteProfiles Protein kinase domain profile. 440 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac10g01780 719 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 412 512 - -
Phac10g01780 719 Coils Coil 389 417 - -
Phac10g01780 719 CDD STK_N 17 161 - -
Phac10g01780 719 MobiDBLite consensus disorder prediction 264 299 - -
Phac10g01780 719 Gene3D HUPs 17 144 IPR014729 -
Phac10g01780 719 MobiDBLite consensus disorder prediction 253 299 - -
Phac10g01780 719 Coils Coil 341 361 - -
Phac10g01780 719 MobiDBLite consensus disorder prediction 198 230 - -
Phac10g01780 719 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 19 142 - -
Phac10g01780 719 Gene3D Phosphorylase Kinase; domain 1 419 512 - -
Phac10g01780 719 Gene3D Transferase(Phosphotransferase) domain 1 513 714 - -
Phac10g01780 719 FunFam Os07g0541700 protein 513 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01780 Phac-Chr10 40466827 40472047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01780 14 706 Receptor kinase-like Gene Family AT1G17540 45.455 0.0 598
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Phac10g01780 PK_Tyr_Ser-Thr 2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01780 - - var:108320196 1070.46