Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01772 ATGGACTCGCGCACGTATAATCCACGCACTGTCGAAGAGGTTTTTAGGGATTTCAAGGGCCGGAGAGCTGCTCTCATCAAAGCCCTTACCACTGATGTTGAAGATTTCTACAACCAATGTGATCCTGAGAAGGAGAATCTCTGCTTGTATGGCTTTCCCAGTGAACAGTGGGAAGTAAATTTACCTGCTGAAGAAGTTCCACCTGAGCTTCCTGAGCCTGTGCTGGGCATTAACTTTGCTAGGGATGGCATGCAAGAAAAAGACTGGCTATCTTTAGTTGCTGTCCATAGTGATGCATGGTTACTTGCTATAGCATTCTATTTTGGAGCAAGATTCGGGTTTGATAAAGCTGACAGGAAACGGCTTTTCAACATGATCAATGAACTGCCAACAATATTTGAAGTTGTTACTGGTGCAGCAAAGAAGCAAGTTAAGGAGAAACCTTCTGTCTCAAACCACAGTGGCAGCAAGTCGAAGTCCAGCTCTAAGCAACGGGCTCCGGAATCTCAGAGTAGACAGTCAAAGCCATTGCAACAACCAAAAGAAGAGGATGAAGATCTGGACGAACAAGATGAAGATGAACATGGAGAGACCTTGTGTGGGGCATGTGGTGAGCATTATGGCACTGATGAATTCTGGATTTGCTGTGACATCTGTGAGAAATGGTTCCATGGTAAATGTGTGAAGATTACCCCAGCTAGGGCAGAGCATATCAAGCAATACAAGTGTCCATCATGCAGTAACAAGAGAGCTCGCCCCTGA 762 0.4541 MDSRTYNPRTVEEVFRDFKGRRAALIKALTTDVEDFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDKADRKRLFNMINELPTIFEVVTGAAKKQVKEKPSVSNHSGSKSKSSSKQRAPESQSRQSKPLQQPKEEDEDLDEQDEDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01772 253 Pfam PHD-finger 200 249 IPR019787 -
Phac10g01772 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Phac10g01772 253 MobiDBLite consensus disorder prediction 149 176 - -
Phac10g01772 253 CDD PHD_AL_plant 199 249 IPR044104 -
Phac10g01772 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 248 IPR013083 -
Phac10g01772 253 FunFam PHD finger alfin-like protein 192 248 - -
Phac10g01772 253 SUPERFAMILY FYVE/PHD zinc finger 189 250 IPR011011 -
Phac10g01772 253 Pfam Alfin 10 138 IPR021998 GO:0006355|GO:0042393
Phac10g01772 253 SMART PHD_3 199 247 IPR001965 -
Phac10g01772 253 MobiDBLite consensus disorder prediction 144 192 - -
Phac10g01772 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Phac10g01772 253 PANTHER CPG BINDING PROTEIN 7 252 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01772 Phac-Chr10 40371104 40375435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01772 6 252 Alfin-like Transcription Factor Family AT3G42790 76.923 1.46e-127 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Phac10g01772 Alfin 8.4e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01772 K26274 - gmx:100170700 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac10g01772 10 40371104 40375435 Phac5g02357 5 42207463 42212254 ECH
Phac10g01772 10 40371104 40375435 Phac10g01772 10 40371104 40375435 ECH
Phac5g02357 5 42207463 42212254 Phac10g01772 10 40371104 40375435 PCT