Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01771 ATGAAGAACTTAATTGAGAAAGGCTCTGGTTCTACCCATTTAGCAGCTCCTTATGCTCTTGGATGCACATCATGGGGGACTTCCTCTGAATCTAATGTTCAACAATCATCCATGTCCAGAAGTTTGACCTTGAAAATGAGTGTTCTGCCGCAACAATGCCATAAGACTAAGCCATTGAATTTTCAATACCAAGACCGAGATTCATCTTCATCTCAATCAACTGGTCAGTCTTATCAGGAAGTTGGTTCAGCGCAATCAGGTCAAATTTCAGTCCAGTGTAGCAATTCTTCTGCTTGTTCAACACTTAACACAACTGGGAGAAAGAGTGTGGAAGGTGTCATCAGGTCTGTTGTGCGGGGTCAGGATTTTACCTTCCCTCCTTCACAACTGTGTCACAACCAACCACTTGCTCATGCTGCTTTCCACCTTGTTGAGCCGTGCTTTAGTGGCCTACTAGCTTCTCCATATGGGCCACAGCCTAACATTCATCCTGCTCAACTGATAGGAATGGCTACTGCTAGAATTCCTCTGCCACTTGATCTTAGTGAAGAGCCTATATATGTGAATGCAAAGCAGTACCATGCTATTCTGAGGCGCCGGCAATACCGTGCAAAACTTGAAGCACAGAACAAACTCATCAAAGAAAGGAAACCATATCTTCACGAGTCTCGCCATCTACATGCAATGAAGAGAGCTAGAGGTTCTGGTGGTCGCTTCTTGAATACCAAAAAGCTTGAAGAGTCTAAACCCACTTCAGCTAACCATGCTGTAGATGTTTCAAGATGTACTCAATTGAATCTGAGGGGAAACATGTCAGAATCTAGGAGGGTGGTTCTAGTGGAGAAGTTGAACTACAGAGATGGTGCTTCCACAACAACCTCTTCCGATATTACTACTGCATCTAATAGTGGTGATGTCTTCCAACAACATCAATCAGAATTTAGATTATGTGGTTACCCTTCTCATATTGGAAGGAACATGCAGGGTTACTCTTCTGATATGGGTGGTGGTGGTGGAAACCAACACCGTCTATCAGTCCTTATGTGA 1047 0.4374 MKNLIEKGSGSTHLAAPYALGCTSWGTSSESNVQQSSMSRSLTLKMSVLPQQCHKTKPLNFQYQDRDSSSSQSTGQSYQEVGSAQSGQISVQCSNSSACSTLNTTGRKSVEGVIRSVVRGQDFTFPPSQLCHNQPLAHAAFHLVEPCFSGLLASPYGPQPNIHPAQLIGMATARIPLPLDLSEEPIYVNAKQYHAILRRRQYRAKLEAQNKLIKERKPYLHESRHLHAMKRARGSGGRFLNTKKLEESKPTSANHAVDVSRCTQLNLRGNMSESRRVVLVEKLNYRDGASTTTSSDITTASNSGDVFQQHQSEFRLCGYPSHIGRNMQGYSSDMGGGGGNQHRLSVLM* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01771 348 ProSitePatterns NF-YA/HAP2 subunit signature. 187 207 IPR018362 GO:0003677|GO:0016602
Phac10g01771 348 SMART cbf3 181 242 IPR001289 GO:0003700|GO:0006355
Phac10g01771 348 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 184 239 IPR001289 GO:0003700|GO:0006355
Phac10g01771 348 Gene3D - 182 243 - -
Phac10g01771 348 PRINTS CCAAT-binding transcription factor subunit B signature 216 239 IPR001289 GO:0003700|GO:0006355
Phac10g01771 348 PRINTS CCAAT-binding transcription factor subunit B signature 185 207 IPR001289 GO:0003700|GO:0006355
Phac10g01771 348 MobiDBLite consensus disorder prediction 59 81 - -
Phac10g01771 348 ProSiteProfiles NF-YA/HAP2 family profile. 182 242 IPR001289 GO:0003700|GO:0006355
Phac10g01771 348 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 32 301 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01771 Phac-Chr10 40363492 40367796 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01771 1 346 CCAAT-HAP2 Transcription Factor Family AT1G17590 42.373 3.66e-64 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Phac10g01771 CBFB_NFYA 3.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01771 K08064 - gmx:100500765 523.857