Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01754 ATGCTTGGATGGTGCTTGGATATCAATCCCATACGATCCCTTCCTACAACAGTCTTAACTTTTGATGACAAGTTCTCTCCTTGCATGAGTTTGGAGTCTCATTCGATTACCTTCCACTACAAGGCTGCAGAAGGCACAAACCAGACTGAATGTGTTATCTGCTTGACAAGTTTTGAAGAAGAGGAAAGTGTACGGAAGCTTCACACTTGCAAGCACATCTTCCACACCTTTTGCATTGACAAGTGGCTTGGCTCTCATTCAGGTTGTCCACTGTGCCGCACTCAGATTGAAAAAGTGAATTCCCAAAACAGTAGAGTAGCTTTGGAAGAAAATGATCACATGATCATGGTCATTGTGAACTCCTGA 366 0.4317 MLGWCLDINPIRSLPTTVLTFDDKFSPCMSLESHSITFHYKAAEGTNQTECVICLTSFEEEESVRKLHTCKHIFHTFCIDKWLGSHSGCPLCRTQIEKVNSQNSRVALEENDHMIMVIVNS* 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01754 121 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 104 IPR013083 -
Phac10g01754 121 SMART ring_2 51 92 IPR001841 -
Phac10g01754 121 SUPERFAMILY RING/U-box 40 99 - -
Phac10g01754 121 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 38 103 - -
Phac10g01754 121 Pfam Ring finger domain 50 93 IPR001841 -
Phac10g01754 121 ProSiteProfiles Zinc finger RING-type profile. 51 93 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01754 Phac-Chr10 40264332 40264697 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01754 6 117 Rapid Response to Elicitors AT3G16720 40.179 3.34e-18 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01754 - - gmx:102661636 229.565