Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01672 ATGCAGAATCATAGGCTGAAACAACAGCAGCAACAACAACAAGCTCTGATGCAGCAAGCTCTTCTCCAACAACAGTCTCTCTACCACCCTGGCCTCCTTGCTCCACCTCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTCGGGAACATCCATACACAGGTAACTGAACCGCTTTTGCAAGAAGTTTTTGCTGGTACTGGCCCAGTGGAAGGTTGTAAACTTATCAGAAAGGAGAAGTCATCATATGGATTCATTCATTACTTTGATCGCAGATCTGCTGCTCTTGCCATATTATCTCTCAATGGAAGGCATTTATTTGGCCAGCCTATCAAAGTTAATTGGGCGTATGCTAGTGGTCAGCGAGAGGACACATCAGGTCATTACAACATTTTTGTTGGTGATCTAAGTCCAGAGGTTACCGATGCTACACTGTTTGCATGCTTTTCTGTCTACTCTAGTTGTTCAGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGAGGATTTGGATTTGTTTCATTCCGTAGTCAACAGGATGCGCAAGGCGCTATAAATGATTTGACCGGTAAATGGCTTGGAAGTAGACAAATACGATGTAACTGGGCAACAAAAGGTGCTGGTGGTATTGAAGAGAAGCAAAACTCAGATGCAAAAAGCGTAGTGGAACTAACAAATGCTTCATCTGAAGATGGTAAAGACATATCTAGCAGTGATGCTCCGGAGAACAATCCTCAGTATACTACCGTTTATGTGGGTAACCTTGCTTCCGAGGTAACTCAACTTGATCTCCATCGACACTTCCATTCTCTTGGAGCTGGAGTTATAGAGGAGGTTCGTGTTCAGCGTGATAAAGGTTTTGGTTTTGTTAGGTACAGTACTCATGCTGAAGCAGCTCTGGCTATTCAGATGGGAAATGCCCAGTCTCTTCTTCTTGGAAAACAAATTAAGTGCTCTTGGGGGAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCTCTTCCCCCACCTGCTGCCGCATCTCTGCCTGGGCTGTCTGCAACCGATCTTATGGTGTACGAGCGACAGCTAGCAATAAGTAAGATGGGGAGCGTGCATGCCTTGATGCATCCCCAAGGGCAACATCCTCTTAAACAAGCAGCAGCCATTGGAGCCAGCCAGGCAATATATGATGGTGGGTTCCAGAATGTTGCAGCTGCACAGCAAATGATGTACTACCAGTAA 1266 0.4589 MQNHRLKQQQQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFAGTGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYSSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQGAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSDAKSVVELTNASSEDGKDISSSDAPENNPQYTTVYVGNLASEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSLLLGKQIKCSWGSKPTPPGTASNPLPPPAAASLPGLSATDLMVYERQLAISKMGSVHALMHPQGQHPLKQAAAIGASQAIYDGGFQNVAAAQQMMYYQ* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01672 421 SUPERFAMILY RNA-binding domain, RBD 251 344 IPR035979 GO:0003676
Phac10g01672 421 FunFam oligouridylate-binding protein 1-like isoform X2 139 234 - -
Phac10g01672 421 FunFam oligouridylate-binding protein 1B-like isoform X2 1 138 - -
Phac10g01672 421 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 45 340 - -
Phac10g01672 421 SUPERFAMILY RNA-binding domain, RBD 40 134 IPR035979 GO:0003676
Phac10g01672 421 SUPERFAMILY RNA-binding domain, RBD 135 222 IPR035979 GO:0003676
Phac10g01672 421 SMART rrm1_1 263 333 IPR000504 GO:0003723
Phac10g01672 421 SMART rrm1_1 142 215 IPR000504 GO:0003723
Phac10g01672 421 SMART rrm1_1 57 126 IPR000504 GO:0003723
Phac10g01672 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 58 124 IPR000504 GO:0003723
Phac10g01672 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 143 213 IPR000504 GO:0003723
Phac10g01672 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 321 IPR000504 GO:0003723
Phac10g01672 421 Gene3D - 138 231 IPR012677 -
Phac10g01672 421 Gene3D - 1 137 IPR012677 -
Phac10g01672 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 141 219 IPR000504 GO:0003723
Phac10g01672 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 337 IPR000504 GO:0003723
Phac10g01672 421 CDD RRM1_PUB1 58 128 - -
Phac10g01672 421 MobiDBLite consensus disorder prediction 239 260 - -
Phac10g01672 421 FunFam Oligouridylate-binding protein 1C 239 341 - -
Phac10g01672 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 56 130 IPR000504 GO:0003723
Phac10g01672 421 Gene3D - 238 341 IPR012677 -
Phac10g01672 421 CDD RRM2_PUB1 140 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01672 Phac-Chr10 39590258 39597552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01672 51 329 Eukaryotic Initiation Factors Gene Family AT1G22760 25.850 9.60e-18 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01672 K13201 - gmx:100781227 773.467