Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01644 ATGGCGACCAAAGATTCTCCTATGGAACTGCTCGATAGCTCCACCGAATCCGAAGGATCCGACCCGGATTCCGACTGTGATGATTCGGGAGAAGACCCCGATTACGACGCGCTCGAAGAAACACATAGCAAGTTCTCAGACCTCTCACTTAAGCACAAGGCAAAAGCGCGCTTTATCGAGGAGAAGGGTCAAGGTGAGGAAGTGTTGGAGGTCACTGATGGAGAGAGTTTTGGGAAAGTTCAAAAGTTATTCGAAGAGGGATTGTTGAATAAATTGAAAGTGGATGAATGCAAGTTGTATTTGAGGAAGAATGGTCTTAGGCTAACTGGAAACAAGGACACACTTATACAACGCATAAGGGAGCACTTTGAGATTTTAAATGGAGGGGAGCAAAGGTATCCGCCTTCTAGCTTTGTGTTGAATTGTAAAGGTGATGCATGCACTGGTGATGTTGTTTTGTTTGAGCAAAATGTCTATGAAATGTTCAACATCGCATCCAGGAGTGCTAGTGGTCCACCTTGTGGCACAAGGATTGTTGCAGGCCGCATAGTGAAAGAAAGCTATGGTGCTGCTAAACAACAGCATACATTTACGATTGAAGTGCTCTGGAGTAAAGGAGAAAAGCCTCTCCCTCCCCTTTACCCCCTACTGATTAAGGGTCGAAACCTTTACAGGCTGAAGACTATGAGACAGAAATGGGAAGATGAAGCAAAGAGGCAGAAAATATTGATGGAAAAACACTCAAGGGGATATCTTGCTAGGGCAGATAGAGAAACAAGAATTCAAGAAAAGGAGAAGAGGAAAATTAATAAGGAAAACAGGGTCTACAAAAAGGAAGCAAGGAAGCAATGTCAACCTCAAGCAACAAATGTAGTCATTAATCCAGGAAAACCCGAATTTCCATCTCGAAATTCAGGTTTATCTGTCAATATAATGAACGAAAGGTCCTCTATTTTAAACAATCCAGCAGCAACTTTAGGAAGAACATCATTTGCTGTTCATAGTATGCCTAATCAGCAAGCTATAATTGGTGGTGTGAGGGGAGCTGAACTTGGTGCAAACTATAATTATGCAGACCCCCATTTCATTGAAAATGCCCACCATATGAGAACTCATTATAGGAAGCCTTTGGCAAATGCCCACCATCACCCATTCATGGCCTCCAACAGAGAAAGCTATCACCCATTCATGGCCTCCAACAGAGAAAGCTATAACCCATTCATGGCCTCCAACAGAGAAAGCTATAAGCTAAATCAGGTGTGTAGACATTATTCCCGTGGAAGGTGCTATTTTGGGGACGACTGCAAATTCTTACATGATTTTAGAGACAGAGGGAATGCATGA 1344 0.4301 MATKDSPMELLDSSTESEGSDPDSDCDDSGEDPDYDALEETHSKFSDLSLKHKAKARFIEEKGQGEEVLEVTDGESFGKVQKLFEEGLLNKLKVDECKLYLRKNGLRLTGNKDTLIQRIREHFEILNGGEQRYPPSSFVLNCKGDACTGDVVLFEQNVYEMFNIASRSASGPPCGTRIVAGRIVKESYGAAKQQHTFTIEVLWSKGEKPLPPLYPLLIKGRNLYRLKTMRQKWEDEAKRQKILMEKHSRGYLARADRETRIQEKEKRKINKENRVYKKEARKQCQPQATNVVINPGKPEFPSRNSGLSVNIMNERSSILNNPAATLGRTSFAVHSMPNQQAIIGGVRGAELGANYNYADPHFIENAHHMRTHYRKPLANAHHHPFMASNRESYHPFMASNRESYNPFMASNRESYKLNQVCRHYSRGRCYFGDDCKFLHDFRDRGNA* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01644 447 MobiDBLite consensus disorder prediction 1 37 - -
Phac10g01644 447 Pfam CCCH-type zinc finger 420 440 IPR041367 -
Phac10g01644 447 ProSiteProfiles Zinc finger C3H1-type profile. 415 442 IPR000571 GO:0046872
Phac10g01644 447 SMART c3hfinal6 416 441 IPR000571 GO:0046872
Phac10g01644 447 Gene3D SAP domain 89 127 IPR036361 -
Phac10g01644 447 PANTHER SAP DOMAIN-CONTAINING PROTEIN 16 287 - -
Phac10g01644 447 ProSiteProfiles SAP motif profile. 89 123 IPR003034 -
Phac10g01644 447 Coils Coil 252 272 - -
Phac10g01644 447 SUPERFAMILY SAP domain 79 124 IPR036361 -
Phac10g01644 447 Gene3D - 408 446 - -
Phac10g01644 447 Pfam SAP domain 89 123 IPR003034 -
Phac10g01644 447 SUPERFAMILY CCCH zinc finger 416 440 IPR036855 GO:0046872
Phac10g01644 447 MobiDBLite consensus disorder prediction 16 35 - -
Phac10g01644 447 ProSiteProfiles IQ motif profile. 237 266 IPR000048 GO:0005515
Phac10g01644 447 SMART sap_9 89 123 IPR003034 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01644 Phac-Chr10 39474206 39477587 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phac10g01644 SAP 3.6e-10 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01644 - - pvu:PHAVU_010G1258000 675.626