Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01636 ATGGCCGCCCCCACCAACGCCGCTGCTGCCCCGCCGCGTCAGCTATCCCAGAAGGAAGCCGACATCCAGATGATGTTGGCCGCCGACGTTCACCTCGGCACCAAGAACTGCGACTTCCAAATGGAACGCTACATCTTCAAGCGCCGCAACGACGGTATTTACATTATCAACCTTGGAAAGACGTGGGAAAAGCTTCAGCTTGCTGCCAGGGTTATTGTTGCAATTGAGAACCCTCAGGATATCATTGTGCAATCTGCAAGGCCTTATGGTCAGAGAGCGGTTCTCAAGTTTGCTCAATACACCGGTGCTCATGCCATTGCTGGAAGGCATACTCCTGGTACCTTTACCAATCAGCTCCAAACCTCATTCAGTGAGCCTCGCCTCCTTATCCTCACGGATCCAAGAACAGATCATCAGCCCATTAAGGAAGGTGCTCTTGGAAACATTCCAACCATTGCTTTCTGTGACACTGACTCACCTATGAGGTATGTCGACATTGGAATTCCTGCCAACAACAAGGGCAAACACAGCATTGGTTGTCTGTTTTGGCTTCTTGCCAGGATGGTGTTGCAAATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGGTGGACTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGGAGGAAGCTCCTGCTGGTGATTATGCCATTACTGACTATAATCCTGGTGCTATTGCTGCTGATGGCCAGTGGCCGGGTACAATTGATCAATCGTGGACAGATGCAGTTCCACAACCAATTCCAGCTGTACCTGGCGTCAACTGGGGAGCACCACCATCTTCAGACACACCCGTTGCAGTTGCAGGAGATTGGGGTGAGGCTGTTCCACCTCCACAACAAATCCCTCTTCCTCCCTCTGGAGTTGAATCTGTCCAACCAACTGGCTGGGAGTAA 939 0.5122 MAAPTNAAAAPPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEEAPAGDYAITDYNPGAIAADGQWPGTIDQSWTDAVPQPIPAVPGVNWGAPPSSDTPVAVAGDWGEAVPPPQQIPLPPSGVESVQPTGWE* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01636 312 MobiDBLite consensus disorder prediction 241 312 - -
Phac10g01636 312 Hamap 40S ribosomal protein SA [rps-0]. 9 257 IPR027498 GO:0003735|GO:0006412|GO:0015935
Phac10g01636 312 NCBIfam 30S ribosomal protein S2 17 213 IPR005707 GO:0003735|GO:0006412|GO:0015935
Phac10g01636 312 Gene3D - 21 227 - -
Phac10g01636 312 Pfam Ribosomal protein S2 25 119 IPR001865 GO:0003735|GO:0005840|GO:0006412
Phac10g01636 312 Pfam Ribosomal protein S2 124 189 IPR001865 GO:0003735|GO:0005840|GO:0006412
Phac10g01636 312 PRINTS Ribosomal protein S2 signature 22 40 IPR001865 GO:0003735|GO:0005840|GO:0006412
Phac10g01636 312 PRINTS Ribosomal protein S2 signature 52 61 IPR001865 GO:0003735|GO:0005840|GO:0006412
Phac10g01636 312 PRINTS Ribosomal protein S2 signature 143 154 IPR001865 GO:0003735|GO:0005840|GO:0006412
Phac10g01636 312 PRINTS Ribosomal protein S2 signature 101 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Phac10g01636 312 PRINTS Ribosomal protein S2 signature 126 143 IPR001865 GO:0003735|GO:0005840|GO:0006412
Phac10g01636 312 PRINTS Ribosomal protein S2 signature 164 178 IPR001865 GO:0003735|GO:0005840|GO:0006412
Phac10g01636 312 SUPERFAMILY Ribosomal protein S2 17 207 IPR023591 -
Phac10g01636 312 FunFam 40S ribosomal protein SA 21 227 - -
Phac10g01636 312 CDD RPS2 25 191 IPR001865 GO:0003735|GO:0005840|GO:0006412
Phac10g01636 312 ProSitePatterns Ribosomal protein S2 signature 2. 126 150 IPR018130 GO:0003735|GO:0005840|GO:0006412
Phac10g01636 312 PANTHER 40S RIBOSOMAL PROTEIN SA 12 296 IPR005707 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01636 Phac-Chr10 39416467 39418641 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01636 6 292 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 73.793 3.18e-152 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01636 K02998 - gmx:100805318 592.038