Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01624 ATGTTTTTGAGTAATTTTCATTCTGAGTTTTGTTTTTGTGTTCTGCTGAATCCTACAATGGCTCCTTCTTCTAAAGCAAACAATGGAACAACACCAAACTCGAGAAAGGGAAAGATTGAAATCAAAGAAGATGAACAGAGAAAGAGGCGATGCGTCACCTTTTCCAAACGCAAGTTGGGGCTTTTCAACAAACTCACAGAACTTTCTCTTCTATGCAAAGCAGAAATCGCTTTGATCATCACCTCTCAAAACGGCAAAGTCTATTCCTGTGGCTACCCCAACACCGACGCCGTCCTCCACCGCTACGTCACCGGAGGGCCGTCTCAGCACTGCAGCGGCACAAGCGAGAAGGAGAAGGAGAAGTTTCTTGAAAAGCAGAGGCTGGAATACGAGAGTGTGCAGGATAAGTTGAAAGAAAAACAGAAACAGTTGAAAGAGTTGAAAGGGGCAGAAAAGAATGGTTCTTGCTTTCCTCCTTGGTGGAATCTCTCCACTGAGGATATGGGTTTGGAGGATCTTGAACAGTTCAAGACCTCTTTGGAAAATTTGAAGCTTAACCTCATCACAACGTTGCAAGAGAAGAAGTTACAGAACCTGCATTAA 603 0.4378 MFLSNFHSEFCFCVLLNPTMAPSSKANNGTTPNSRKGKIEIKEDEQRKRRCVTFSKRKLGLFNKLTELSLLCKAEIALIITSQNGKVYSCGYPNTDAVLHRYVTGGPSQHCSGTSEKEKEKFLEKQRLEYESVQDKLKEKQKQLKELKGAEKNGSCFPPWWNLSTEDMGLEDLEQFKTSLENLKLNLITTLQEKKLQNLH* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01624 200 ProSiteProfiles MADS-box domain profile. 34 94 IPR002100 GO:0003677|GO:0046983
Phac10g01624 200 Coils Coil 123 153 - -
Phac10g01624 200 MobiDBLite consensus disorder prediction 23 42 - -
Phac10g01624 200 Gene3D - 46 151 IPR036879 GO:0003677|GO:0046983
Phac10g01624 200 SUPERFAMILY SRF-like 35 110 IPR036879 GO:0003677|GO:0046983
Phac10g01624 200 Coils Coil 173 193 - -
Phac10g01624 200 PRINTS MADS domain signature 36 56 IPR002100 GO:0003677|GO:0046983
Phac10g01624 200 PRINTS MADS domain signature 56 71 IPR002100 GO:0003677|GO:0046983
Phac10g01624 200 PRINTS MADS domain signature 71 92 IPR002100 GO:0003677|GO:0046983
Phac10g01624 200 PANTHER MADS BOX PROTEIN 36 189 - -
Phac10g01624 200 SMART madsneu2 34 93 IPR002100 GO:0003677|GO:0046983
Phac10g01624 200 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 45 89 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01624 Phac-Chr10 39302236 39303243 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01624 38 184 Type I MADS-box Gene Family AT5G60440 35.099 1.57e-22 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phac10g01624 SRF-TF 6.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01624 - - gsj:114418701 228.409