Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01623 ATGAATTTTCCCTCAACTGTTCATGAAGTTGACGAATTCTACTTTTCAGTATCTGAAGAAATGTTGCCAATGTCAGATGAGAGATATGCTGAACAGCTGCAACTACAAGAAGCTCTCTATTCCTCCACAACGTCAAGTGCTAGGGTTGTAAAGGAAGTTCTACATGTGGATGAAGATCTTGAGAGTGACCTAGCTCTAAGAACCCGTAAGGGTAAACAGAAAGTGATCGGTGAAGATGATAAGGGTGACCTAGCCAAGGGAGAAGAAATGTTCAGGAACCAAAACTGTTCTCACCTTTATTGTGATGATTGCATTGGGAAGCATGTTACTGCAAAGGTTCAGGAAAATGTATTAACGGTGAAATGTCCTGAACCAAAATGTAAAGGGGTTATAGAGTCTCAGAACTGTCGTTCAATTATCCCTAAAGAAGTGTTGGATAGATGGGAAGATGCTCTTTGTGAGAATGTGGTGAATGCATCACAGAAGTTTTACTGTCCTTTTAAGGATTGTTCAGCTATGATGATATGTGATTCAGGTGATTCAAAGAAAGTTGTGACCGTATCCGAGTGTCCACATTGCAATAGACTCTTTTGTGCACAGTGCAAGGTTCCGTGGCACTCAGGAGCTAATTGTATTGAGTTTCAGATTGTTTTGGATGGAGAGAGGGAAGATCAAACGGTGATGGAACTTGCAAAGTCTAAAAGTTGGAAAAGATGTCCAAAATGCAATTTCTATGTAGAAAGAATTGATGGATGTATACATATTTCATGCAGGTTTGTGTTAAAACCAATCTTGTGA 798 0.396 MNFPSTVHEVDEFYFSVSEEMLPMSDERYAEQLQLQEALYSSTTSSARVVKEVLHVDEDLESDLALRTRKGKQKVIGEDDKGDLAKGEEMFRNQNCSHLYCDDCIGKHVTAKVQENVLTVKCPEPKCKGVIESQNCRSIIPKEVLDRWEDALCENVVNASQKFYCPFKDCSAMMICDSGDSKKVVTVSECPHCNRLFCAQCKVPWHSGANCIEFQIVLDGEREDQTVMELAKSKSWKRCPKCNFYVERIDGCIHISCRFVLKPIL* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01623 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 161 IPR013083 -
Phac10g01623 265 CDD BRcat_RBR_unk 159 214 - -
Phac10g01623 265 ProSitePatterns Zinc finger RING-type signature. 96 105 IPR017907 -
Phac10g01623 265 ProSiteProfiles TRIAD supradomain profile. 69 265 IPR044066 -
Phac10g01623 265 SUPERFAMILY RING/U-box 87 157 - -
Phac10g01623 265 SUPERFAMILY RING/U-box 152 215 - -
Phac10g01623 265 SUPERFAMILY RING/U-box 224 257 - -
Phac10g01623 265 Gene3D - 208 259 - -
Phac10g01623 265 FunFam RBR-type E3 ubiquitin transferase 82 159 - -
Phac10g01623 265 Pfam IBR domain, a half RING-finger domain 147 211 IPR002867 GO:0008270
Phac10g01623 265 SMART ibrneu5 146 211 IPR002867 GO:0008270
Phac10g01623 265 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 79 257 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01623 Phac-Chr10 39283132 39284002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01623 91 258 C3H Transcription Factor Family AT2G19610 26.286 1.41e-16 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01623 K11975 - gmx:100816161 344.354