Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01621 ATGTTTCCATTCCATCCTCATGGAGCTCCGAAACACGCTTGCACTCTTCTCGCTGTAACCTGTGGCGCAAGTTTCGCTGAGCACAAGGCCTCACAGAATCAGCACAAATATCCTTTTCCCGAGCTAGTTTCCGCGGGGCGTCTTGAGGTTCAAACTCTTCGGAGTCCGGATAAGGAACAGTTTAGGAAAGTGCTGGAGTCGTATCAACCGAATTTTGTTTATTTGCAAGGAGAGCAGCTAGAGAATGACAAAGTTGGTTCATTGGTCTGGCAAGGTTTGGAATTATCGACTTCTGAGGATATCATAGAGCTCTTTGGTTCCACATTGCCGACGGCTGTTTATTTAGAAATACCAAATGGAGAAAGTTTTGCAGATGCTCTTCATCTTAAGGGAATCCCATATGTTATATTTTGGAAGAATGCCTTTTTTTCTTATGCTGCCTGCCATTTTCGTCAAGCATTTCTTTCAGTTGTACAGAGTTCATCTACACATACCTGGGATGCTTTTCACCTTGCACGTGCCTCTTTTGAACTTTACTGTGTTCAAAACAATCAAGTGCTTTCTTCTCACAGCCATGATGCTATTAGTGAGATGGGGCCACACCTTCTCGGTGACTGTCTCAAAATCAATGTTGACCCTCCAGAGATTGATGAGGAAGATGATGACGAAAATTCCTCAGGCATTCTGCCTGCCATTAAGATACATGAAGATGAAGTGAACTTGAGATTTCTTGTCTGTGGTGCACCTTCGACTGTTGACGAGTCATTGCTAAGATCTTTGGAGGATGGACTCAGAGCTCTCTTAACTATTGAAATCCGCGGTTGCAAGCTCCATGGCAAGTTTAGTGCCCCACCACCACCTCTTCAGGCAGCCACTTTTTCTCGAGGAGTTGTGACCATGCGATGTGATATATCAACCTGTAGTTCTGCACATATCTCACTTCTGGTATCGGGCAGTGCACAAACTTGTTTTAATGATCAGCTCCTGGAGAGTCATATAAAAAATGAGATAATTGAGAAGAGTCAACTAGTTCACGCGCAGCTCAACAATGAGGGAAACAAACAGAACATCTCTGAACCTCGCAGATCTGCTTCTATTGCCTGTGGAGCACCTGTATTTGAAATTTGCATGAAGATTCCTCAATGGGCTTTACAGATTTTGAGACAGCTAGCACCTGAGGTTTTTTATCGAAGTTTAGTTGCACTTGGTATTGCTAGTATTCAGGGGTTGCCTATAGCTTCTTTTGAGAAAGATGATGCTGAGCGCTTACTTTTCTTCTATCAAAGTTGTGAGAAAGATAGTGGTACAAGCAAAAATAATATAATATTTGGAAGTCCCCCTGGTTGGTTGAAACCACCCCCTCCTAGAAGAAAAAGGTGTGAATCAAGCCAAGGGGCTAGCCCTGGTCTTCATGAAGGCGTCTTTGCGGGGCCTGCCAGTGTTTATAAAGTAAATGAAGAGGAAAAGGATAGAAAAATGGCGAATGGCATTAGCACCCCATTAGCTCCTGCTAGACAGAGATTAAAAGTATCTGCAATGAGGCCAATTCCTCACATTCGCCGCCATAGAATGACACCTTTTTGTGGACCTTCTGAGACAGATGGTTTTGATGGTGGGCAAGTAGAGCCTACTTTGCCACTTGTTGCCCCAACAAAGCGTAGTATTGGATCAACATCTGCAACACATAGAAAATCATTTTCAAGTGCAGCTCAATCTAAGCAGGTTATTTCGTTGAACCCATTGCCTCTTAAGAAGCATGGTTGCGGTAGAGGCCCAGTACAGACTTGCTCTGAGGAGGACTTTCTTAAAGATGTCATGGAGTTTCTGATTCTCCGGGGACATAATCGATTAATTCCTCAAGGAGGGCTTACCGAGTTCCCCGATGCCATACTCAATGGAAAACGTCTTGATCTCTACAATTTGTATAAAGAGGTGGTTACGAGGGGAGGATTTCATGTTGGCAATGGTATAAACTGGAAGGGGCAAATCTTTTCAAAGATGCGGAATTATACAACTACCAATAGAATGACTGGTGTTGGAAATACTCTGAAAAGACATTATGAGACCTACCTTTTAGAATATGAATTAGCACATGACGATGTGGATGGAGAATGTTGCTTGTTGTGTCACAGTAGTGCAGCTGGTGATTGGGTGAATTGTGGCATATGTGGTGAGTGGGCCCACTTTGGCTGTGACAGAAGGCAGGGTCTAGGCGCATTTAAGGATTATGCAAAAACAGATGGGTTAGAATACATATGTCCTCATTGTAGTGTTACAAATTTCAAGAAGAAACAAAATGTTGCAAATGGGTATTCTCAAGGGTCAATGTCTTCACGACACCTTTGA 2346 0.4322 MFPFHPHGAPKHACTLLAVTCGASFAEHKASQNQHKYPFPELVSAGRLEVQTLRSPDKEQFRKVLESYQPNFVYLQGEQLENDKVGSLVWQGLELSTSEDIIELFGSTLPTAVYLEIPNGESFADALHLKGIPYVIFWKNAFFSYAACHFRQAFLSVVQSSSTHTWDAFHLARASFELYCVQNNQVLSSHSHDAISEMGPHLLGDCLKINVDPPEIDEEDDDENSSGILPAIKIHEDEVNLRFLVCGAPSTVDESLLRSLEDGLRALLTIEIRGCKLHGKFSAPPPPLQAATFSRGVVTMRCDISTCSSAHISLLVSGSAQTCFNDQLLESHIKNEIIEKSQLVHAQLNNEGNKQNISEPRRSASIACGAPVFEICMKIPQWALQILRQLAPEVFYRSLVALGIASIQGLPIASFEKDDAERLLFFYQSCEKDSGTSKNNIIFGSPPGWLKPPPPRRKRCESSQGASPGLHEGVFAGPASVYKVNEEEKDRKMANGISTPLAPARQRLKVSAMRPIPHIRRHRMTPFCGPSETDGFDGGQVEPTLPLVAPTKRSIGSTSATHRKSFSSAAQSKQVISLNPLPLKKHGCGRGPVQTCSEEDFLKDVMEFLILRGHNRLIPQGGLTEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFKKKQNVANGYSQGSMSSRHL* 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01621 781 Gene3D - 593 698 IPR036431 GO:0003677
Phac10g01621 781 CDD PHD_ARID4_like 705 756 - -
Phac10g01621 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 699 762 IPR013083 -
Phac10g01621 781 SMART ARID_2 592 695 - -
Phac10g01621 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 7 778 IPR042293 -
Phac10g01621 781 CDD ARID 597 695 - -
Phac10g01621 781 ProSiteProfiles ARID domain profile. 595 699 IPR001606 GO:0003677
Phac10g01621 781 MobiDBLite consensus disorder prediction 441 470 - -
Phac10g01621 781 SUPERFAMILY ARID-like 595 710 IPR036431 GO:0003677
Phac10g01621 781 Pfam ARID/BRIGHT DNA binding domain 598 695 IPR001606 GO:0003677
Phac10g01621 781 SMART bright_3 596 700 IPR001606 GO:0003677
Phac10g01621 781 SUPERFAMILY FYVE/PHD zinc finger 691 759 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01621 Phac-Chr10 39235882 39244169 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01621 4 770 ARID Transcription Factor Family AT3G43240 59.302 0.0 929
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Phac10g01621 ARID 3.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01621 - - gmx:100816540 1441.79